Zobrazeno 1 - 10
of 57
pro vyhledávání: '"Giulio Formenti"'
Autor:
Yury V. Bukhman, Susanne Meyer, Li-Fang Chu, Linelle Abueg, Jessica Antosiewicz-Bourget, Jennifer Balacco, Michael Brecht, Erica Dinatale, Olivier Fedrigo, Giulio Formenti, Arkarachai Fungtammasan, Swagarika Jaharlal Giri, Michael Hiller, Kerstin Howe, Daisuke Kihara, Daniel Mamott, Jacquelyn Mountcastle, Sarah Pelan, Keon Rabbani, Ying Sims, Alan Tracey, Jonathan M. D. Wood, Erich D. Jarvis, James A. Thomson, Mark J. P. Chaisson, Ron Stewart
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-11 (2024)
Abstract Suncus etruscus is one of the world’s smallest mammals, with an average body mass of about 2 grams. The Etruscan shrew’s small body is accompanied by a very high energy demand and numerous metabolic adaptations. Here we report a chromoso
Externí odkaz:
https://doaj.org/article/ec7570f6ca634d4787cf612628d10141
Autor:
Young Ho Lee, Linelle Abueg, Jin-Koo Kim, Young Wook Kim, Olivier Fedrigo, Jennifer Balacco, Giulio Formenti, Kerstin Howe, Alan Tracey, Jonathan Wood, Françoise Thibaud-Nissen, Bo Hye Nam, Eun Soo No, Hye Ran Kim, Chul Lee, Erich D. Jarvis, Heebal Kim
Publikováno v:
Scientific Data, Vol 10, Iss 1, Pp 1-12 (2023)
Abstract Chub mackerels (Scomber japonicus) are a migratory marine fish widely distributed in the Indo-Pacific Ocean. They are globally consumed for their high Omega-3 content, but their population is declining due to global warming. Here, we generat
Externí odkaz:
https://doaj.org/article/56788d62a3744ca19ad511e40087ab5d
Autor:
Edward S. Rice, Antton Alberdi, James Alfieri, Giridhar Athrey, Jennifer R. Balacco, Philippe Bardou, Heath Blackmon, Mathieu Charles, Hans H. Cheng, Olivier Fedrigo, Steven R. Fiddaman, Giulio Formenti, Laurent A. F. Frantz, M. Thomas P. Gilbert, Cari J. Hearn, Erich D. Jarvis, Christophe Klopp, Sofia Marcos, Andrew S. Mason, Deborah Velez-Irizarry, Luohao Xu, Wesley C. Warren
Publikováno v:
BMC Biology, Vol 21, Iss 1, Pp 1-17 (2023)
Abstract Background The red junglefowl, the wild outgroup of domestic chickens, has historically served as a reference for genomic studies of domestic chickens. These studies have provided insight into the etiology of traits of commercial importance.
Externí odkaz:
https://doaj.org/article/ec4f115e8cb94416b00a87c078953189
Autor:
Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Darwin Tree of Life Consortium, Giulio Formenti, Linelle Abueg, James Torrance, Eugene W. Myers, Richard Durbin, Mark Blaxter, Shane A. McCarthy
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb) and highly accurate (> Q20). Because of these properties, they have revolutionised genome assembly leading to more accurate and contiguous genomes. In eukaryo
Externí odkaz:
https://doaj.org/article/83a929ea54734f328969ac7528d3ad5f
Autor:
Anjana C. Karawita, Yuanyuan Cheng, Keng Yih Chew, Arjun Challagulla, Robert Kraus, Ralf C. Mueller, Marcus Z. W. Tong, Katina D. Hulme, Helle Bielefeldt-Ohmann, Lauren E. Steele, Melanie Wu, Julian Sng, Ellesandra Noye, Timothy J. Bruxner, Gough G. Au, Suzanne Lowther, Julie Blommaert, Alexander Suh, Alexander J. McCauley, Parwinder Kaur, Olga Dudchenko, Erez Aiden, Olivier Fedrigo, Giulio Formenti, Jacquelyn Mountcastle, William Chow, Fergal J. Martin, Denye N. Ogeh, Françoise Thiaud-Nissen, Kerstin Howe, Alan Tracey, Jacqueline Smith, Richard I. Kuo, Marilyn B. Renfree, Takashi Kimura, Yoshihiro Sakoda, Mathew McDougall, Hamish G. Spencer, Michael Pyne, Conny Tolf, Jonas Waldenström, Erich D. Jarvis, Michelle L. Baker, David W. Burt, Kirsty R. Short
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-24 (2023)
Abstract Background The Australian black swan (Cygnus atratus) is an iconic species with contrasting plumage to that of the closely related northern hemisphere white swans. The relative geographic isolation of the black swan may have resulted in a li
Externí odkaz:
https://doaj.org/article/78ecfc98e26e450ea7815f3fe5cca8c8
Autor:
Huishi Toh, Chentao Yang, Giulio Formenti, Kalpana Raja, Lily Yan, Alan Tracey, William Chow, Kerstin Howe, Lucie A. Bergeron, Guojie Zhang, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, John Fogg, Bogdan Kirilenko, Chetan Munegowda, Michael Hiller, Aashish Jain, Daisuke Kihara, Arang Rhie, Adam M. Phillippy, Scott A. Swanson, Peng Jiang, Dennis O. Clegg, Erich D. Jarvis, James A. Thomson, Ron Stewart, Mark J. P. Chaisson, Yury V. Bukhman
Publikováno v:
BMC Biology, Vol 20, Iss 1, Pp 1-21 (2022)
Abstract Background The Nile rat (Avicanthis niloticus) is an important animal model because of its robust diurnal rhythm, a cone-rich retina, and a propensity to develop diet-induced diabetes without chemical or genetic modifications. A closer simil
Externí odkaz:
https://doaj.org/article/9c728bac3c2c453abb352401d7a81103
Autor:
Byung June Ko, Chul Lee, Juwan Kim, Arang Rhie, Dong Ahn Yoo, Kerstin Howe, Jonathan Wood, Seoae Cho, Samara Brown, Giulio Formenti, Erich D. Jarvis, Heebal Kim
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-26 (2022)
Abstract Background False duplications in genome assemblies lead to false biological conclusions. We quantified false duplications in popularly used previous genome assemblies for platypus, zebra finch, and Anna’s Hummingbird, and their new counter
Externí odkaz:
https://doaj.org/article/b5cc7d4f8b024cf2b6ddd59c199ba656
Autor:
Juwan Kim, Chul Lee, Byung June Ko, Dong Ahn Yoo, Sohyoung Won, Adam M. Phillippy, Olivier Fedrigo, Guojie Zhang, Kerstin Howe, Jonathan Wood, Richard Durbin, Giulio Formenti, Samara Brown, Lindsey Cantin, Claudio V. Mello, Seoae Cho, Arang Rhie, Heebal Kim, Erich D. Jarvis
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-29 (2022)
Abstract Background Many short-read genome assemblies have been found to be incomplete and contain mis-assemblies. The Vertebrate Genomes Project has been producing new reference genome assemblies with an emphasis on being as complete and error-free
Externí odkaz:
https://doaj.org/article/c65a95c7709445a7996240f8b36d38ef
Autor:
Nataliya Timoshevskaya, Kaan İ. Eşkut, Vladimir A. Timoshevskiy, Sofia M.C. Robb, Carson Holt, Jon E. Hess, Hugo J. Parker, Cindy F. Baker, Allison K. Miller, Cody Saraceno, Mark Yandell, Robb Krumlauf, Shawn R. Narum, Ralph T. Lampman, Neil J. Gemmell, Jacquelyn Mountcastle, Bettina Haase, Jennifer R. Balacco, Giulio Formenti, Sarah Pelan, Ying Sims, Kerstin Howe, Olivier Fedrigo, Erich D. Jarvis, Jeramiah J. Smith
Publikováno v:
Cell Reports, Vol 42, Iss 3, Pp 112263- (2023)
Summary: Programmed DNA loss is a gene silencing mechanism that is employed by several vertebrate and nonvertebrate lineages, including all living jawless vertebrates and songbirds. Reconstructing the evolution of somatically eliminated (germline-spe
Externí odkaz:
https://doaj.org/article/8eedbc68b1b441c3b322f413f3b4b86d
Autor:
Jakub Skorupski, Florian Brandes, Christian Seebass, Wolfgang Festl, Przemysław Śmietana, Jennifer Balacco, Nivesh Jain, Tatiana Tilley, Linelle Abueg, Jonathan Wood, Ying Sims, Giulio Formenti, Olivier Fedrigo, Erich D. Jarvis
Publikováno v:
International Journal of Molecular Sciences, Vol 24, Iss 19, p 14816 (2023)
The European mink Mustela lutreola (Mustelidae) ranks among the most endangered mammalian species globally, experiencing a rapid and severe decline in population size, density, and distribution. Given the critical need for effective conservation stra
Externí odkaz:
https://doaj.org/article/ac0e52d57a2743ee9ee4a97a7bfb6644