Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Girier, Thibault"'
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, El Djoudi, Yassin, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Chemidlin Prévost-Bouré, Nicolas, Maron, Pierre-Alain, Ranjard, Lionel, Terrat, Sébastien
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2020, 21 (1), pp.1-21. ⟨10.1186/s12859-020-03829-3⟩
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-21 (2020)
BMC Bioinformatics, 2020, 21 (1), pp.1-21. ⟨10.1186/s12859-020-03829-3⟩
BMC Bioinformatics, BioMed Central, 2020, 21 (1), pp.1-21. ⟨10.1186/s12859-020-03829-3⟩
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-21 (2020)
BMC Bioinformatics, 2020, 21 (1), pp.1-21. ⟨10.1186/s12859-020-03829-3⟩
Background The ability to compare samples or studies easily using metabarcoding so as to better interpret microbial ecology results is an upcoming challenge. A growing number of metabarcoding pipelines are available, each with its own benefits and li
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::8f6b24f86cabaa623a43b5c4a7fa0e26
https://hal-agrosup-dijon.archives-ouvertes.fr/hal-03014150
https://hal-agrosup-dijon.archives-ouvertes.fr/hal-03014150
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, Djoudi, Yassin El, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Prévost-Bouré, Nicolas Chemidlin, Pierre-Alain Maron, Ranjard, Lionel, Terrat, Sébastien
Additional file 3. Figure S2. Folder structure of BIOCOM-PIPE analysis.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::84766c24f47d01bec62d81673852d904
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, Djoudi, Yassin El, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Prévost-Bouré, Nicolas Chemidlin, Pierre-Alain Maron, Ranjard, Lionel, Terrat, Sébastien
Additional file 2. Figure S1. Folder structure of the BIOCOM-PIPE pipeline.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a04e082e465026a2fac27f2d1d67bdb1
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, Djoudi, Yassin El, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Prévost-Bouré, Nicolas Chemidlin, Pierre-Alain Maron, Ranjard, Lionel, Terrat, Sébastien
Additional file 5. Doc S2. Materials and methods, details.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4ef37060a1b2a15e5b6f70ebb7ff7ca
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, Djoudi, Yassin El, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Prévost-Bouré, Nicolas Chemidlin, Pierre-Alain Maron, Ranjard, Lionel, Terrat, Sébastien
Additional file 6. Figure S4. (A) Number of OTUs detected for the simulated dataset, with various pipelines and clustering thresholds. (B) Number of taxonomic groups detected for each taxonomic level (phylum, class, order, family, genus), with variou
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::309bbd9664216dc45a6d94e9f4ac0d05
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, Djoudi, Yassin El, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Prévost-Bouré, Nicolas Chemidlin, Pierre-Alain Maron, Ranjard, Lionel, Terrat, Sébastien
Additional file 8. Figure S4. Boxplots of Shannon indexes for each land use type of the RMQS subsample. Figure S5. Boxplots of the inverse Simpson indexes for each land use type of the RMQS subsample.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5049a2d1a077d2fa3356b19e50d528cd
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, Djoudi, Yassin El, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Prévost-Bouré, Nicolas Chemidlin, Pierre-Alain Maron, Ranjard, Lionel, Terrat, Sébastien
Additional file 1. Doc S1. BIOCOM-PIPE user guide.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2d97e2942c43440dd4c788e7aa44c55d
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, Djoudi, Yassin El, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Prévost-Bouré, Nicolas Chemidlin, Pierre-Alain Maron, Ranjard, Lionel, Terrat, Sébastien
Additional file 4. Figure S3. Soil texture triangle of the RMQS subsample.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3c962945029fce7533f9e7b6183f2e3e
Autor:
Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, Djoudi, Yassin El, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Prévost-Bouré, Nicolas Chemidlin, Pierre-Alain Maron, Ranjard, Lionel, Terrat, Sébastien
Additional file 7. Figure S5. (A) Number of detected chimera for the artificial mock dataset, with various pipelines. For BIOCOM-PIPE, both the Hunting step (H) and the Hunting-Recovering step (R) were given. (B) Number of OTUs (with and without sing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::326a68efd4c6c9a511c51b8391f09f1f
Autor:
Djemiel C; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., Dequiedt S; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., Karimi B; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., Cottin A; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., Girier T; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., El Djoudi Y; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., Wincker P; CEA/Institut de Biologie François Jacob/Génoscope, 2, Rue Gaston Crémieux, CP5706, 91057, Evry Cedex, France., Lelièvre M; Agroécologie - Plateforme GenoSol, BP 86510, 21000, Dijon, France., Mondy S; Agroécologie - Plateforme GenoSol, BP 86510, 21000, Dijon, France., Chemidlin Prévost-Bouré N; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., Maron PA; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., Ranjard L; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France., Terrat S; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France. sebastien.terrat@inrae.fr.
Publikováno v:
BMC bioinformatics [BMC Bioinformatics] 2020 Oct 31; Vol. 21 (1), pp. 492. Date of Electronic Publication: 2020 Oct 31.