Zobrazeno 1 - 10
of 131
pro vyhledávání: '"Giovanni Bussi"'
Autor:
Vasyl V Mykuliak, Rolle Rahikainen, Neil J Ball, Giovanni Bussi, Benjamin T Goult, Vesa P Hytönen
Publikováno v:
PLoS Computational Biology, Vol 20, Iss 8, p e1012341 (2024)
Vinculin binds to specific sites of mechanically unfolded talin rod domains to reinforce the coupling of the cell's exterior to its force generation machinery. Force-dependent vinculin-talin complexation and dissociation was previously observed as co
Externí odkaz:
https://doaj.org/article/3f62545f8996407aa000b77f36082b97
Publikováno v:
ACS Central Science, Vol 8, Iss 8, Pp 1218-1228 (2022)
Externí odkaz:
https://doaj.org/article/df5cc1ff5f7e495e8a303c01c36714e3
Autor:
Lewis Rolband, Damian Beasock, Yang Wang, Yao-Gen Shu, Jonathan D. Dinman, Tamar Schlick, Yaoqi Zhou, Jeffrey S. Kieft, Shi-Jie Chen, Giovanni Bussi, Abdelghani Oukhaled, Xingfa Gao, Petr Šulc, Daniel Binzel, Abhjeet S. Bhullar, Chenxi Liang, Peixuan Guo, Kirill A. Afonin
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 20, Iss , Pp 6120-6137 (2022)
The International Society of RNA Nanotechnology and Nanomedicine (ISRNN) serves to further the development of a wide variety of functional nucleic acids and other related nanotechnology platforms. To aid in the dissemination of the most recent advanc
Externí odkaz:
https://doaj.org/article/a7b658ecc43d44eeabee93b85ac3c176
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-9 (2020)
Zika xrRNAs survive in host cells because they can be unwound and copied by replicases, but resist degradation by exonucleases. Here authors use atomistic models and simulations and uncover that pulling into a pore the xrRNA $${3}^{\prime}$$ 3′ end
Externí odkaz:
https://doaj.org/article/0c8f977208a6439691205b8011ea62e7
Publikováno v:
Applied Sciences, Vol 12, Iss 3, p 1139 (2022)
Molecular dynamics simulations of solids are often performed using anisotropic barostats that allow the shape and volume of the periodic cell to change during the simulation. Most existing schemes are based on a second-order differential equation tha
Externí odkaz:
https://doaj.org/article/aa6dd6b4355b4c19aaced4a9892470c9
Autor:
Cameron Abrams, Giovanni Bussi
Publikováno v:
Entropy, Vol 16, Iss 1, Pp 163-199 (2013)
We review a selection of methods for performing enhanced sampling in molecular dynamics simulations. We consider methods based on collective variable biasing and on tempering, and offer both historical and contemporary perspectives. In collective-var
Externí odkaz:
https://doaj.org/article/83722de07d664b34873aab014ab845b8
Publikováno v:
Computation, Vol 6, Iss 1, p 15 (2018)
Molecular dynamics (MD) simulations allow the investigation of the structural dynamics of biomolecular systems with unrivaled time and space resolution. However, in order to compensate for the inaccuracies of the utilized empirical force fields, it i
Externí odkaz:
https://doaj.org/article/ba7a7ad761d04f2195c6abaa2cbeeea0
Autor:
Vojtěch Mlýnský, Michal Janeček, Petra Kührová, Thorben Fröhlking, Michal Otyepka, Giovanni Bussi, Pavel Banáš, Jiří Šponer
Publikováno v:
Journal of Chemical Theory and Computation. 18:2642-2656
Atomistic molecular dynamics simulations represent an established technique for investigation of RNA structural dynamics. Despite continuous development, contemporary RNA simulations still suffer from suboptimal accuracy of empirical potentials (forc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::683ea7790ea39672f7d97cb18d933773
https://doi.org/10.1021/acs.jctc.1c01222
https://doi.org/10.1021/acs.jctc.1c01222
Autor:
Mattia Bernetti, Giovanni Bussi
Publikováno v:
Current opinion in structural biology. 78
Conformational dynamics is crucial for ribonucleic acid (RNA) function. Techniques such as nuclear magnetic resonance, cryo-electron microscopy, small- and wide-angle X-ray scattering, chemical probing, single-molecule Förster resonance energy trans
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cbf9a5d1590d2b3aed3699a31e0c437b
https://pubmed.ncbi.nlm.nih.gov/36463773
https://pubmed.ncbi.nlm.nih.gov/36463773