Atomic structure of a nudivirus occlusion body protein determined from a 70-year-old crystal sample.

Autor: Keown JR; Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. Jeremy@strubi.ox.ac.uk., Crawshaw AD; Diamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK., Trincao J; Diamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK., Carrique L; Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK., Gildea RJ; Diamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK., Horrell S; Diamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK., Warren AJ; Diamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK., Axford D; Diamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK., Owen R; Diamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK., Evans G; Diamond Light Source Ltd, Harwell Science & Innovation Campus, Didcot, UK.; Rosalind Franklin Institute, Harwell Campus, Didcot, UK., Bézier A; Institut de Recherche sur la Biologie de l'Insecte (IRBI), UMR7261 CNRS-Université de Tours, Tours, France., Metcalf P; School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand., Grimes JM; Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. Jonathan@strubi.ox.ac.uk.

Publikováno v: Nature communications [Nat Commun] 2023 Jul 13; Vol. 14 (1), pp. 4160. Date of Electronic Publication: 2023 Jul 13.

The CCP4 suite: integrative software for macromolecular crystallography.

Autor: Agirre J; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Atanasova M; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Bagdonas H; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Ballard CB; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Baslé A; Biosciences Institute, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom., Beilsten-Edmands J; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Borges RJ; The Center of Medicinal Chemistry (CQMED), Center for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas (UNICAMP), Av. Dr. André Tosello 550, 13083-886 Campinas, Brazil., Brown DG; Laboratoires Servier SAS Institut de Recherches, Croissy-sur-Seine, France., Burgos-Mármol JJ; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom., Berrisford JM; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Bond PS; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Caballero I; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain., Catapano L; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom., Chojnowski G; European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, 22607 Hamburg, Germany., Cook AG; The Wellcome Centre for Cell Biology, University of Edinburgh, Michael Swann Building, Max Born Crescent, The King's Buildings, Edinburgh EH9 3BF, United Kingdom., Cowtan KD; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Croll TI; Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 0XY, United Kingdom., Debreczeni JÉ; Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Darwin Building, Cambridge Science Park, Milton Road, Cambridge CB4 0WG, United Kingdom., Devenish NE; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Dodson EJ; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Drevon TR; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Emsley P; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom., Evans G; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Evans PR; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom., Fando M; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Foadi J; Department of Mathematical Sciences, University of Bath, Bath, United Kingdom., Fuentes-Montero L; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Garman EF; Department of Biochemistry, University of Oxford, Dorothy Crowfoot Hodgkin Building, Oxford OX1 3QU, United Kingdom., Gerstel M; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Gildea RJ; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Hatti K; Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 0XY, United Kingdom., Hekkelman ML; Oncode Institute and Department of Biochemistry, Netherlands Cancer Institute, Amsterdam, The Netherlands., Heuser P; European Molecular Biology Laboratory, c/o DESY, Notkestrasse 85, 22607 Hamburg, Germany., Hoh SW; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Hough MA; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Jenkins HT; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Jiménez E; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain., Joosten RP; Oncode Institute and Department of Biochemistry, Netherlands Cancer Institute, Amsterdam, The Netherlands., Keegan RM; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Keep N; Department of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom., Krissinel EB; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Kolenko P; Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Břehová 7, 115 19 Prague 1, Czech Republic., Kovalevskiy O; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Lamzin VS; European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, 22607 Hamburg, Germany., Lawson DM; Department of Biochemistry and Metabolism, John Innes Centre, Norwich NR4 7UH, United Kingdom., Lebedev AA; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Leslie AGW; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom., Lohkamp B; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 77 Stockholm, Sweden., Long F; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom., Malý M; Biological Sciences, Institute for Life Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom., McCoy AJ; Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 0XY, United Kingdom., McNicholas SJ; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Medina A; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain., Millán C; Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 0XY, United Kingdom., Murray JW; Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom., Murshudov GN; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom., Nicholls RA; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom., Noble MEM; Translational and Clinical Research Institute, Newcastle University, Paul O'Gorman Building, Medical School, Framlington Place, Newcastle upon Tyne NE2 4HH, United Kingdom., Oeffner R; Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 0XY, United Kingdom., Pannu NS; Department of Infectious Diseases, Leiden University Medical Center, PO Box 9600, 2300 RC Leiden, The Netherlands., Parkhurst JM; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Pearce N; Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden., Pereira J; Biozentrum and SIB Swiss Institute of Bioinformatics, University of Basel, 4056 Basel, Switzerland., Perrakis A; Oncode Institute and Department of Biochemistry, Netherlands Cancer Institute, Amsterdam, The Netherlands., Powell HR; Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom., Read RJ; Department of Haematology, Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge CB2 0XY, United Kingdom., Rigden DJ; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom., Rochira W; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Sammito M; Discovery Centre, Biologics Engineering, AstraZeneca, Biomedical Campus, 1 Francis Crick Avenue, Trumpington, Cambridge CB2 0AA, United Kingdom., Sánchez Rodríguez F; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Sheldrick GM; Department of Structural Chemistry, Georg-August-Universität Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany., Shelley KL; Institute for Protein Design, University of Washington, Seattle, WA 98195, USA., Simkovic F; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom., Simpkin AJ; Laboratoires Servier SAS Institut de Recherches, Croissy-sur-Seine, France., Skubak P; Department of Infectious Diseases, Leiden University Medical Center, PO Box 9600, 2300 RC Leiden, The Netherlands., Sobolev E; European Molecular Biology Laboratory, c/o DESY, Notkestrasse 85, 22607 Hamburg, Germany., Steiner RA; Randall Centre for Cell and Molecular Biophysics, Faculty of Life Sciences and Medicine, King's College London, London SE1 9RT, United Kingdom., Stevenson K; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Tews I; Biological Sciences, Institute for Life Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom., Thomas JMH; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom., Thorn A; Institute for Nanostructure and Solid State Physics, Universität Hamburg, 22761 Hamburg, Germany., Valls JT; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain., Uski V; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Usón I; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain., Vagin A; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Velankar S; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Vollmar M; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Walden H; School of Molecular Biosciences, College of Medical Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom., Waterman D; STFC, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom., Wilson KS; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom., Winn MD; Scientific Computing Department, Science and Technology Facilities Council, Didcot OX11 0FA, United Kingdom., Winter G; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Wojdyr M; Global Phasing Limited (United Kingdom), Sheraton House, Castle Park, Cambridge CB3 0AX, United Kingdom., Yamashita K; MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.

Publikováno v: Acta crystallographica. Section D, Structural biology [Acta Crystallogr D Struct Biol] 2023 Jun 01; Vol. 79 (Pt 6), pp. 449-461. Date of Electronic Publication: 2023 May 30.

DIALS as a toolkit.

Autor: Winter G; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK., Beilsten-Edmands J; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK., Devenish N; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK., Gerstel M; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK., Gildea RJ; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK., McDonagh D; STFC Rutherford Appleton Laboratory, Didcot, UK., Pascal E; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK., Waterman DG; STFC Rutherford Appleton Laboratory, Didcot, UK.; CCP4, Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot, UK., Williams BH; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK., Evans G; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot, UK.; Rosalind Franklin Institute, Harwell Science and Innovation Campus, Didcot, UK.

Publikováno v: Protein science : a publication of the Protein Society [Protein Sci] 2022 Jan; Vol. 31 (1), pp. 232-250. Date of Electronic Publication: 2021 Nov 24.

Improving signal strength in serial crystallography with DIALS geometry refinement.

Autor: Brewster AS; Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Waterman DG; STFC Rutherford Appleton Laboratory, Didcot OX11 0QX, England., Parkhurst JM; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Gildea RJ; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Young ID; Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., O'Riordan LJ; Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Yano J; Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Winter G; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Evans G; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Sauter NK; Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Publikováno v: Acta crystallographica. Section D, Structural biology [Acta Crystallogr D Struct Biol] 2018 Sep 01; Vol. 74 (Pt 9), pp. 877-894. Date of Electronic Publication: 2018 Sep 03.

DIALS: implementation and evaluation of a new integration package.

Autor: Winter G; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Waterman DG; STFC Rutherford Appleton Laboratory, Didcot OX11 0FA, England., Parkhurst JM; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Brewster AS; Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA., Gildea RJ; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Gerstel M; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Fuentes-Montero L; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Vollmar M; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England., Michels-Clark T; Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA., Young ID; Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA., Sauter NK; Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA., Evans G; Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England.

Publikováno v: Acta crystallographica. Section D, Structural biology [Acta Crystallogr D Struct Biol] 2018 Feb 01; Vol. 74 (Pt 2), pp. 85-97. Date of Electronic Publication: 2018 Feb 01.