A general algorithm for consensus 3D cell segmentation from 2D segmented stacks.

Autor: Zhou FY; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Yapp C; Laboratory of Systems Pharmacology, Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.; Ludwig Center at Harvard, Harvard Medical School, Boston, MA, 02115, USA., Shang Z; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA., Daetwyler S; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Marin Z; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Islam MT; Children's Research Institute and Department of Pediatrics, Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA., Nanes B; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Jenkins E; Kennedy Institute of Rheumatology, University of Oxford, OX3 7FY UK., Gihana GM; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Chang BJ; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Weems A; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Dustin M; Kennedy Institute of Rheumatology, University of Oxford, OX3 7FY UK., Morrison S; Children's Research Institute and Department of Pediatrics, Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA., Fiolka R; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Dean K; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Jamieson A; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA., Sorger PK; Laboratory of Systems Pharmacology, Department of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.; Ludwig Center at Harvard, Harvard Medical School, Boston, MA, 02115, USA.; Department of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115, USA., Danuser G; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 May 06. Date of Electronic Publication: 2024 May 06.

Surface-guided computing to analyze subcellular morphology and membrane-associated signals in 3D.

Autor: Zhou FY; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Weems A; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Gihana GM; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Chen B; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Chang BJ; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA., Driscoll M; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Current address: Department of Pharmacology, University of Minnesota, Minneapolis, MN, USA., Danuser G; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Cecil H. & Ida Green Center for System Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.

Publikováno v: ArXiv [ArXiv] 2023 Apr 12. Date of Electronic Publication: 2023 Apr 12.

Increasing the field-of-view in oblique plane microscopy via optical tiling.

Autor: Chen B; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA., Chang BJ; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA., Zhou FY; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA., Daetwyler S; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA., Sapoznik E; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA., Nanes BA; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA.; Department of Dermatology, UT Southwestern Medical Center, Dallas, Texas, USA., Terrazas I; Department of Internal Medicine, Division of Hematology and Oncology, UT Southwestern Medical Center, Dallas, Texas, USA.; Department of Immunology, UT Southwestern Medical Center, Dallas, Texas, USA.; Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, Texas, USA., Gihana GM; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA., Castro LP; Department of Cell Biology, UT Southwestern Medical Center, Dallas, Texas, USA., Chan IS; Department of Internal Medicine, Division of Hematology and Oncology, UT Southwestern Medical Center, Dallas, Texas, USA.; Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, Texas, USA.; Department of Molecular Biology, UT Southwestern Medical Center, Dallas, Texas, USA., Conacci-Sorrell M; Department of Cell Biology, UT Southwestern Medical Center, Dallas, Texas, USA.; Harold C. Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, USA.; Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA., Dean KM; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA., Millett-Sikking A; Calico Life Sciences LLC, South San Francisco, CA, USA., York AG; Calico Life Sciences LLC, South San Francisco, CA, USA., Fiolka R; Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, Texas, USA.

Publikováno v: Biomedical optics express [Biomed Opt Express] 2022 Oct 04; Vol. 13 (11), pp. 5616-5627. Date of Electronic Publication: 2022 Oct 04 (Print Publication: 2022).

Prolonged cyclin-dependent kinase inhibition results in septin perturbations during return to growth and mitosis.

Autor: Gihana GM; Department of Biology, Indiana University, Bloomington, IN., Musser TR; Department of Biology, Indiana University, Bloomington, IN., Thompson O; Department of Biology, Indiana University, Bloomington, IN., Lacefield S; Department of Biology, Indiana University, Bloomington, IN sonil@indiana.edu.

Publikováno v: The Journal of cell biology [J Cell Biol] 2018 Jul 02; Vol. 217 (7), pp. 2429-2443. Date of Electronic Publication: 2018 May 09.