Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Gideon Zipprich"'
Autor:
Fatemeh Behjati Ardakani, Kathrin Kattler, Karl Nordström, Nina Gasparoni, Gilles Gasparoni, Sarah Fuchs, Anupam Sinha, Matthias Barann, Peter Ebert, Jonas Fischer, Barbara Hutter, Gideon Zipprich, Charles D. Imbusch, Bärbel Felder, Jürgen Eils, Benedikt Brors, Thomas Lengauer, Thomas Manke, Philip Rosenstiel, Jörn Walter, Marcel H. Schulz
Publikováno v:
Epigenetics & Chromatin, Vol 11, Iss 1, Pp 1-14 (2018)
Abstract Background Bidirectional promoters (BPs) are prevalent in eukaryotic genomes. However, it is poorly understood how the cell integrates different epigenomic information, such as transcription factor (TF) binding and chromatin marks, to drive
Externí odkaz:
https://doaj.org/article/aeda19e919924fcba37b9cf5784814fb
Autor:
Jules Kerssemakers, Andreas Kling, Gideon Zipprich, Stefan Borufka, Jürgen Eils, Philip Kensche, Manuel Prinz, Lena Genthner, Alke Jugold, Christian Lawerenz, Roland Eils, Ingrid Scholz, Eva Reisinger
Publikováno v:
Journal of Biotechnology. 261:53-62
The One Touch Pipeline (OTP) is an automation platform managing Next-Generation Sequencing (NGS) data and calling bioinformatic pipelines for processing these data. OTP handles the complete digital process from import of raw sequence data via alignme
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0cac393e16863b625a0d8f36d6f5b8bb
https://doi.org/10.1016/j.jbiotec.2017.08.006
https://doi.org/10.1016/j.jbiotec.2017.08.006
Autor:
Philip Rosenstiel, Marcel H. Schulz, Charles D. Imbusch, Benedikt Brors, Baerbel Felder, Barbara Hutter, Sarah Fuchs, Jörn Walter, Jürgen Eils, Fatemeh Behjati Ardakani, Kathrin Kattler, Karl Nordström, Peter Ebert, Nina Gasparoni, Gideon Zipprich, Anupam Sinha, Matthias Barann, Thomas Lengauer, Thomas Manke, Gilles Gasparoni, Jonas Fischer
Publikováno v:
Epigenetics & Chromatin, Vol 11, Iss 1, Pp 1-14 (2018)
Epigenetics & Chromatin
Epigenetics & Chromatin
Background Bidirectional promoters (BPs) are prevalent in eukaryotic genomes. However, it is poorly understood how the cell integrates different epigenomic information, such as transcription factor (TF) binding and chromatin marks, to drive gene expr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6b33ef3b09367681c1e3fc5323ddafec
https://doi.org/10.1186/s13072-018-0236-7
https://doi.org/10.1186/s13072-018-0236-7
Autor:
Marcel H. Schulz, Baerbel Felder, Nina Gasparoni, Thomas Manke, Gilles Gasparoni, Kathrin Kattler, Barbara Hutter, Jonas Fischer, Benedikt Brors, Joern Walter, Anupam Sinha, Peter Ebert, Thomas Lengauer, Philip Rosenstiel, Fatemeh Behjati Ardakani, Sarah Fuchs, Karl Nordström, Gideon Zipprich, Juergen Eils, Matthias Barann
BackgroundBidirectional promoters (BPs) are prevalent in eukaryotic genomes. However, it is poorly understood how the cell integrates different epigenomic information, such as transcription factor (TF) binding and chromatin marks, to drive gene expre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cf7b618d37df8a91304366e15aac5028
https://doi.org/10.1101/315937
https://doi.org/10.1101/315937
Autor:
Christian P. Kratz, Benedikt Brors, Manfred Gessler, Jan J. Molenaar, Sebastian M. Waszak, Dietmar R. Lohmann, Vasilisa A. Rudneva, Kristian W. Pajtler, Gideon Zipprich, Daniel Baumhoer, Roland Kappler, Michael Heinold, Matthias Schlesner, Birgit Burkhardt, Stefan Rutkowski, Ewa Koscielniak, Sander Lambo, Sebastian Bender, Stephan Wolf, Michaela Nathrath, Angela J. Waanders, Jürgen Eils, Barbara C. Worst, Angelika Eggert, Michael C. Frühwald, Susanne Gröbner, Cornelia Eckert, Barbara Hutter, Hendrik Witt, Yanling Liu, Paul A. Northcott, Maia Segura-Wang, Pablo Landgraf, Sebastian Brabetz, Danny A. Zwijnenburg, Jenny Wegert, Arndt Borkhardt, Marcel Kool, Gudrun Fleischhack, Renate Kirschner-Schwabe, Kortine Kleinheinz, Christof M. Kramm, Daniel Hübschmann, Pascal Johann, Simone Fulda, Dominik Sturm, Gunther Richter, Peter Lichter, Katja von Hoff, Michaela Kuhlen, Gilles Vassal, Jan O. Korbel, Johannes H. Schulte, Rosario M. Piro, Joachim Weischenfeldt, Reiner Siebert, Udo Kontny, Christian Lawerenz, Gnana Prakash Balasubramanian, David T.W. Jones, Charlotte M. Niemeyer, Uta Dirksen, Lukas Chavez, Serap Erkek, Adam C. Resnick, Frank Westermann, Stefan S. Bielack, Stefan M. Pfister, Ursula D. Weber, Xin Zhou, Marc Zapatka, Cornelis M. van Tilburg, Roland Eils, Jan Koster, Stefan Burdach, Simone Hettmer, Thomas Klingebiel, Andreas E. Kulozik, Olaf Witt, Ivo Buchhalter, Pichai Raman, Claudia Blattmann, Jinghui Zhang, Elke Pfaff
In this Article, author Benedikt Brors was erroneously associated with affiliation number '8' (Department of Developmental Neurobiology, St Jude Children's Research Hospital, Memphis, Tennessee, USA); the author's two other affiliations (affiliations
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34f873180f3cfb0fb7e1bf649604c489
https://www.ncbi.nlm.nih.gov/pubmed/29875405
https://www.ncbi.nlm.nih.gov/pubmed/29875405
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery
Autor:
Sergio Abrignani, David Adams, Melanie de Almeida, ALTUCCI, Lucia, Viren Amin, Ido Amit, Stylianos E, Antonarakis, Samuel Aparicio, Takahiro Arima, Laura Arrigoni, Rob Arts, Vahid Asnafi, Manel Esteller, Jae Bum Bae, Kevin Bassler, Stephan Beck, Benjamin Berkman, Bradley E, Bernstein, Mikhail Bilenky, Adrian Bird, Christoph Bock, Bernhard Boehm, Guillaume Bourque, Charles E, Breeze, Benedikt Brors, David Bujold, Oliver Burren, Marion J, Bussemakers, Adam Butterworth, Elias Campo, Enrique Carrillo de Santa Pau, Lisa Chadwick, Kui Ming Chan, Wei Chen, Tom H, Cheung, Luca Chiapperino, Nak Hyen Choi, Ho Ryun Chung, Laura Clarke, Joseph M, Connors, Philippe Cronet, John Danesh, Manolis Dermitzakis, Gerard Drewes, Pawel Durek, Stephanie Dyke, Tomasz Dylag, Connie J, Eaves, Peter Ebert, Roland Eils, Jürgen Eils, Catherine A, Ennis, Tariq Enver, Elise A, Feingold, Bärbel Felder, Anne Ferguson Smith, Jude Fitzgibbon, Paul Flicek, Roger S, Y, Foo, Peter Fraser, Mattia Frontini, Eileen Furlong, Sitanshu Gakkhar, Nina Gasparoni, Gilles Gasparoni, Daniel H, Geschwind, Petar Glažar, Thomas Graf, Frank Grosveld, Xin Yuan Guan, Roderic Guigo, Ivo G, Gut, Alf Hamann, Bok Ghee Han, R, Alan Harris, Simon Heath, Kristian Helin, Jan G, Hengstler, Alireza Heravi Moussavi, Karl Herrup, Steven Hill, Jason A, Hilton, Benjamin C, Hitz, Bernhard Horsthemke, Ming Hu, Joo Yeon Hwang, Nancy Y, Takashi Ito, Biola Maria Javierre, Sasa Jenko, Thomas Jenuwein, Yann Joly, Steven J, M, Jones, Yae Kanai, Hee Gyung Kang, Aly Karsan, Alexandra K, Kiemer, Song Cheol Kim, Bong Jo Kim, Hyeon Hoe Kim, Hiroshi Kimura, Sarah Kinkley, Filippos Klironomos, In Uk Koh, Myrto Kostadima, Christopher Kressler, Roman Kreuzhuber, Anshul Kundaje, Ralf Küppers, Carolyn Larabell, Paul Lasko, Mark Lathrop, S, Lee, Suman Lee, Hans Lehrach, Elsa Leitão, Thomas Lengauer, Åke Lernmark, David Leslie, Gilberto K, K, Leung, Danny Leung, Markus Loeffler, Yussanne Ma, Antonello Mai, Thomas Manke, Eric R, Marcotte, Marco A, Marra, Joost H, A, Martens, Jose Ignacio Martin Subero, Karen Maschke, Christoph Merten, Aleksandar Milosavljevic, Saverio Minucci, Totai Mitsuyama, Richard A, Moore, Fabian Müller, Andrew J, Mungall, Mihai G, Netea, Karl Nordström, Irene Norstedt, Hiroaki Okae, Vitor Onuchic, Francis Ouellette, Willem Ouwehand, Massimiliano Pagani, Vera Pancaldi, Thomas Pap, Tomi Pastinen, Ronak Patel, Dirk S, Paul, Michael J, Pazin, Pier Giuseppe Pelicci, Anthony G, Phillips, Julia Polansky, Bo Porse, J, Andrew Pospisilik, Shyam Prabhakar, Dena C, Procaccini, Andreas Radbruch, Nikolaus Rajewsky, Vardham Rakyan, Wolf Reik, Bing Ren, David Richardson, Andreas Richter, Daniel Rico, David J, Roberts, Philip Rosenstiel, Mark Rothstein, Abdulrahman Salhab, Hiroyuki Sasaki, John S, Satterlee, Sascha Sauer, Claudia Schacht, Florian Schmidt, Gerd Schmitz, Stefan Schreiber, Christopher Schröder, Dirk Schübeler, Joachim L, Schultze, Ronald P, Schulyer, Marcel Schulz, Martin Seifert, Katsuhiko Shirahige, Reiner Siebert, Thomas Sierocinski, Laura Siminoff, Anupam Sinha, Nicole Soranzo, Salvatore Spicuglia, Mikhail Spivakov, Christian Steidl, Seth Strattan, Michael Stratton, Peter Südbeck, Hao Sun, Narumi Suzuki, Yutaka Suzuki, Amos Tanay, David Torrents, Frederick L, Tyson, Thomas Ulas, Sebastian Ullrich, Toshikazu Ushijima, Alfonso Valencia, Edo Vellenga, Martin Vingron, Chris Wallace, Stefan Wallner, Jörn Walter, Huating Wang, Stephanie Weber, Nina Weiler, Andreas Weller, Andrew Weng, Steven Wilder, Sam M, Wiseman, Angela R, Zhenguo Wu, Jieyi Xiong, Yasuhiro Yamashita, Xinyi Yang, Desmond Y, Yap, Kevin Y, Yip, Stephen Yip, Jae Il Yoo, Daniel Zerbino, Gideon Zipprich
Publikováno v:
Cell, Vol. 167, No 5 (2016) pp. 1145-1149
Cell, 167, 1145-1149
Cell
Cell, 2016, 167 (5), pp.1145--1149. ⟨10.1016/j.cell.2016.11.007⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
Cell, 167, 5, pp. 1145-1149
Cell, 167, 1145-1149
Cell
Cell, 2016, 167 (5), pp.1145--1149. ⟨10.1016/j.cell.2016.11.007⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
Cell, 167, 5, pp. 1145-1149
Item does not contain fulltext The International Human Epigenome Consortium (IHEC) coordinates the generation of a catalog of high-resolution reference epigenomes of major primary human cell types. The studies now presented (see the Cell Press IHEC w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::845e48803a7d1e4ee8470ca376fb77af
https://archive-ouverte.unige.ch/unige:90729
https://archive-ouverte.unige.ch/unige:90729
Autor:
Peter Ebert, Jieyi Xiong, Baerbel Felder, Fatemeh Behjati Ardakani, Barbara Hutter, Matthias Barann, Kathrin Gianmoena, Benedikt Brors, Marcel H. Schulz, Wei Chen, Jörn Walter, Philip Rosenstiel, Azim Dehghani Amirabad, Jan G. Hengstler, Alf Hamann, Jürgen Eils, Anupam Sinha, Karl Nordström, Thomas Lengauer, Gideon Zipprich, Florian Schmidt, Julia K. Polansky, Nina Gasparoni, Gilles Gasparoni, Sebastian Froehler, Cristina Cadenas
Publikováno v:
Nucleic Acids Research
Nucleic acids research, 45(1):54–66
Nucleic acids research, 45(1):54–66
The binding and contribution of transcription factors (TF) to cell specific gene expression is often deduced from open-chromatin measurements to avoid costly TF ChIP-seq assays. Thus, it is important to develop computational methods for accurate TF b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::29f693851b069e8c0dc2c900aa33a7b2
https://pubmed.ncbi.nlm.nih.gov/27899623
https://pubmed.ncbi.nlm.nih.gov/27899623
Autor:
Karl Nordström, Gilles Gasparoni, Sebastian Fröhler, Gideon Zipprich, Elsa Leitão, Thomas Manke, Ludger Klein-Hitpass, Wei Chen, Daniela Beißer, Christopher Schröder, Gerd Schmitz, Bernhard Horsthemke, Tea Berulava, Jörn Walter, Matthias Barann, Thomas Lengauer, Philip Rosenstiel, Ulrike Bönisch, Stefan Wallner, Claudia Haak, Corinna Attenberger, Filippos Klironomos, Bärbel Felder, Sven Rahmann, Peter Ebert, Laura Arrigoni, Andreas S. Richter, Fabian Müller, Benedikt Brors, Nikolaus Rajewsky
Publikováno v:
Epigenetics & Chromatin
Background Monocyte-to-macrophage differentiation involves major biochemical and structural changes. In order to elucidate the role of gene regulatory changes during this process, we used high-throughput sequencing to analyze the complete transcripto
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::90b0d643fe419e417dd56d39097064a7
https://hdl.handle.net/11858/00-001M-0000-002B-1693-211858/00-001M-0000-002B-1691-6
https://hdl.handle.net/11858/00-001M-0000-002B-1693-211858/00-001M-0000-002B-1691-6
Autor:
Pawel, Durek, Karl, Nordström, Gilles, Gasparoni, Abdulrahman, Salhab, Christopher, Kressler, Melanie, de Almeida, Kevin, Bassler, Thomas, Ulas, Florian, Schmidt, Jieyi, Xiong, Petar, Glažar, Filippos, Klironomos, Anupam, Sinha, Sarah, Kinkley, Xinyi, Yang, Laura, Arrigoni, Azim Dehghani, Amirabad, Fatemeh Behjati, Ardakani, Lars, Feuerbach, Oliver, Gorka, Peter, Ebert, Fabian, Müller, Na, Li, Stefan, Frischbutter, Stephan, Schlickeiser, Carla, Cendon, Sebastian, Fröhler, Bärbel, Felder, Nina, Gasparoni, Charles D, Imbusch, Barbara, Hutter, Gideon, Zipprich, Yvonne, Tauchmann, Simon, Reinke, Georgi, Wassilew, Ute, Hoffmann, Andreas S, Richter, Lina, Sieverling, Hyun-Dong, Chang, Uta, Syrbe, Ulrich, Kalus, Jürgen, Eils, Benedikt, Brors, Thomas, Manke, Jürgen, Ruland, Thomas, Lengauer, Nikolaus, Rajewsky, Wei, Chen, Jun, Dong, Birgit, Sawitzki, Ho-Ryun, Chung, Philip, Rosenstiel, Marcel H, Schulz, Joachim L, Schultze, Andreas, Radbruch, Jörn, Walter, Alf, Hamann, Julia K, Polansky
Publikováno v:
Immunity. 45(5)
The impact of epigenetics on the differentiation of memory T (Tmem) cells is poorly defined. We generated deep epigenomes comprising genome-wide profiles of DNA methylation, histone modifications, DNA accessibility, and coding and non-coding RNA expr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::f984f4c0dc533da02d88e8ddc0aaab5b
https://pubmed.ncbi.nlm.nih.gov/27851915
https://pubmed.ncbi.nlm.nih.gov/27851915
Autor:
Robert J. Wechsler-Reya, Fabian Kratochwil, Ursula D. Weber, Gideon Zipprich, Stephan Wolf, Florence M.G. Cavalli, Adrian M. Stütz, Scott Zuyderduyn, Roland Eils, Peter Lichter, Wei Wang, Charles D. Imbusch, Dominik Sturm, Stefan Wiemann, Guido Reifenberger, Stefan Rutkowski, Martin Ebinger, Wolfram Scheurlen, Hans-Jörg Warnatz, Lourdes Adriana Esparza, Marc Remke, Thomas Zichner, Andrea Wittmann, Martin Mynarek, Eszter Turányi, David Sumerauer, Martin U. Schuhmann, Marcel Kool, Emma Sandén, Chris Lawerenz, Marc Zapatka, Rogier Versteeg, Stefan M. Pfister, Benedikt Brors, Daisuke Kawauchi, Jan O. Korbel, Peter Siesjö, Jan Koster, Volker Hovestadt, Catherine A. Lee, Peter Hauser, David Shih, Cynthia C. Bartholomae, Peter van Sluis, Karel Zitterbart, Giles W. Robinson, Michael D. Taylor, Jörg Felsberg, Torsten Pietsch, Paul A. Northcott, Huriye Seker-Cin, Marie-Laure Yaspo, Benjamin Raeder, Jaroslav Sterba, Katja von Hoff, Richard J. Gilbertson, Sabine Schmidt, David T.W. Jones, Marina Ryzhova, Scott R. VandenBerg, Anna Darabi, Andreas von Deimling, Andrey Korshunov, Thomas Risch, Olaf Witt, Ivo Buchhalter, Laura Sieber, Richard Volckmann, Sebastian Stark, Natalie Jäger, Andreas E. Kulozik, Gary D. Bader, Amar Gajjar, Nicolle Diessl, Serap Erkek, H. Leighton Grimes, Jürgen Eils, Linda Linke, Christof von Kalle
Publikováno v:
Nature
Nature, 511(7510), 428-434. Nature Publishing Group
Nature, 511(7510), 428-434. Nature Publishing Group
Medulloblastoma is a highly malignant paediatric brain tumour currently treated with a combination of surgery, radiation, and chemotherapy, posing a considerable burden of toxicity to the developing child. Genomics has illuminated the extensive inter
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd925a19cc486c57abfbefb4bf8fdb7a
https://europepmc.org/articles/PMC4201514/
https://europepmc.org/articles/PMC4201514/