Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States.

Autor: Bellinzona G; Department of Biology and Biotechnology, University of Pavia, 27100 Pavia, Italy., Nardi T; Department of Biology and Biotechnology, University of Pavia, 27100 Pavia, Italy., Castelli M; Department of Biology and Biotechnology, University of Pavia, 27100 Pavia, Italy., Batisti Biffignandi G; Department of Biology and Biotechnology, University of Pavia, 27100 Pavia, Italy., Adjou K; UMR BIPAR, Anses, Laboratoire de Santé Animale, INRAE, École Nationale Vétérinaire d'Alfort, 94700 Maisons-Alfort, France., Betson M; Department of Comparative Biomedical Sciences, School of Veterinary Medicine, University of Surrey, Guildford GU2 7AL, United Kingdom., Blanchard Y; Viral Genetics and Biosecurity Unit (GVB), French Agency for Food, Environmental and Occupational Health Safety (ANSES), 22440 Ploufragan, France., Bujila I; Department of Microbiology, Public Health Agency of Sweden, SE-171 82 Solna, Sweden., Chalmers R; Cryptosporidium Reference Unit, Public Health Wales, Swansea SA2 8QA, United Kingdom.; Swansea Medical School, Swansea University, Swansea SA2 8PP, United Kingdom., Davidson R; Norwegian Veterinary Institute, N-1431 Ås, Norway., D'Avino N; Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche, 06126 Perugia, Italy., Enbom T; Animal Health Diagnostic Unit, Finnish Food Authority, FI-70210 Kuopio, Finland., Gomes J; National Institute for Agricultural and Veterinary Research, 1300 Lisbon, Portugal., Karadjian G; UMR BIPAR, Anses, Laboratoire de Santé Animale, INRAE, École Nationale Vétérinaire d'Alfort, 94700 Maisons-Alfort, France., Klotz C; Department of Infectious Diseases, Robert Koch Institute, 13353 Berlin, Germany., Östlund E; Swedish Veterinary Agency, SE-751 89 Uppsala, Sweden., Plutzer J; National Institute for Public Education, Budapest, 1007, Hungary., Rimhanen-Finne R; Finnish Institute for Health and Welfare, FI-00271 Helsinki, Finland., Robinson G; Cryptosporidium Reference Unit, Public Health Wales, Swansea SA2 8QA, United Kingdom.; Swansea Medical School, Swansea University, Swansea SA2 8PP, United Kingdom., Sannella AR; Department of Infectious Diseases, Istituto Superiore di Sanità, 00161 Rome, Italy., Sroka J; Department of Parasitology and Invasive Diseases, National Veterinary Research Institute, 24-100 Pulawy, Poland., Stensvold CR; Statens Serum Institut, 2300 Copenhagen, Denmark., Troell K; Swedish Veterinary Agency, SE-751 89 Uppsala, Sweden., Vatta P; Department of Infectious Diseases, Istituto Superiore di Sanità, 00161 Rome, Italy., Zalewska B; Veterinary Research Institute, Department of Food and Feed Safety, 621 00 Brno, Czech Republic., Bandi C; Department of Biosciences, University of Milan, 20133 Milan, Italy., Sassera D; Department of Biology and Biotechnology, University of Pavia, 27100 Pavia, Italy; davide.sassera@unipv.it simone.caccio@iss.it.; IRCCS Fondazione Policlinico San Matteo, 27100 Pavia, Italy., Cacciò SM; Department of Infectious Diseases, Istituto Superiore di Sanità, 00161 Rome, Italy; davide.sassera@unipv.it simone.caccio@iss.it.

Publikováno v: Genome research [Genome Res] 2024 Jul 23; Vol. 34 (6), pp. 877-887. Date of Electronic Publication: 2024 Jul 23.

Optimising machine learning prediction of minimum inhibitory concentrations in Klebsiella pneumoniae .

Autor: Batisti Biffignandi G; Department of Biology and Biotechnology, University of Pavia, Pavia, Italy.; MRC Centre for Global Infectious Disease Analysis, Imperial College, London, England, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Chindelevitch L; MRC Centre for Global Infectious Disease Analysis, Imperial College, London, England, UK., Corbella M; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Feil EJ; The Milner Centre for Evolution, Department of Life Sciences, University of Bath, Bath, UK., Sassera D; Department of Biology and Biotechnology, University of Pavia, Pavia, Italy.; Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Lees JA; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK.

Publikováno v: Microbial genomics [Microb Genom] 2024 Mar; Vol. 10 (3).

The evolution of intramitochondriality in Midichloria bacteria.

Autor: Floriano AM; Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.; Université de Lyon, Université Lyon 1, CNRS, VetAgro Sup, Laboratoire de Biométrie et Biologie Evolutive, Villeurbanne, France., Batisti Biffignandi G; Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.; Department of Clinical, Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy., Castelli M; Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy., Olivieri E; Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.; Pavia Department, Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia-Romagna, Pavia, Italy., Clementi E; Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy., Comandatore F; Department of Biomedical and Clinical Sciences, Pediatric Clinical Research Center 'Romeo ed Enrica Invernizzi', University of Milan, Milan, Italy., Rinaldi L; Department of Veterinary Medicine and Animal Production, University of Naples Federico II, CREMOPAR Regione Campania, Naples, Italy., Opara M; Zoonotic Parasites Research Group, Department of Parasitology and Entomology, Faculty of Veterinary Medicine, University of Abuja, Abuja, Nigeria., Plantard O; INRAE, Oniris, BIOEPAR, Nantes, France., Palomar AM; Center of Rickettsiosis and Arthropod-Borne Diseases (CRETAV), San Pedro University Hospital, Center of Biomedical Research from La Rioja (CIBIR), Logroño, Spain., Noël V; MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), University of Montpellier (UM), Montpellier, France., Vijay A; Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia., Lo N; School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia., Makepeace BL; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK., Duron O; MIVEGEC (Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle), University of Montpellier (UM), Montpellier, France., Jex A; Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Melbourne, Victoria, Australia., Guy L; Department of Medical Biochemistry and Microbiology, Science for Life Laboratories, Uppsala University, Uppsala, Sweden., Sassera D; Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy.

Publikováno v: Environmental microbiology [Environ Microbiol] 2023 Nov; Vol. 25 (11), pp. 2102-2117. Date of Electronic Publication: 2023 Jun 12.

Antigen discovery by bioinformatics analysis and peptide microarray for the diagnosis of cystic echinococcosis.

Autor: Batisti Biffignandi G; Department of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy.; Department of Biology and Biotechnology 'L.Spallanzani', University of Pavia, Pavia, Italy., Vola A; Microbiology and Virology Unit, Diagnostic Medicine Department, IRCCS San Matteo Hospital Foundation, Pavia, Italy., Sassera D; Department of Biology and Biotechnology 'L.Spallanzani', University of Pavia, Pavia, Italy., Najafi-Fard S; Translational Research Unit, National Institute for Infectious Diseases (INMI) 'Lazzaro Spallanzani'-IRCCS, Rome, Italy., Gomez Morales MA; Foodborne and Neglected Parasitoses Unit, Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy., Brunetti E; Department of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy.; Microbiology and Virology Unit, Diagnostic Medicine Department, IRCCS San Matteo Hospital Foundation, Pavia, Italy., Teggi A; Department of Infectious and Tropical Diseases, Sant'Andrea Hospital University of Rome 'Sapienza', Rome, Italy., Goletti D; Translational Research Unit, National Institute for Infectious Diseases (INMI) 'Lazzaro Spallanzani'-IRCCS, Rome, Italy., Petrone L; Translational Research Unit, National Institute for Infectious Diseases (INMI) 'Lazzaro Spallanzani'-IRCCS, Rome, Italy., Tamarozzi F; Department of Infectious-Tropical Diseases and Microbiology, IRCCS Sacro Cuore Don Calabria Hospital, Negrar di Valpolicella, Verona, Italy.

Publikováno v: PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2023 Apr 12; Vol. 17 (4), pp. e0011210. Date of Electronic Publication: 2023 Apr 12 (Print Publication: 2023).

Genomic Characterization of an O101:H9-ST167 NDM-5-Producing Escherichia coli Strain from a Kitten in Italy.

Autor: Batisti Biffignandi G; Department of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Paviagrid.8982.b, Pavia, Italy.; Department of Biology and Biotechnology 'L. Spallanzani', University of Paviagrid.8982.b, Pavia, Italy., Piazza A; Department of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Paviagrid.8982.b, Pavia, Italy., Marchesini F; Department of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Paviagrid.8982.b, Pavia, Italy., Prati P; Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna 'B. Ubertini', Pavia, Italy., Mercato A; Department of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Paviagrid.8982.b, Pavia, Italy., Abu Alshaar A; Department of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Paviagrid.8982.b, Pavia, Italy., Andreoli G; Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna 'B. Ubertini', Pavia, Italy., Sassera D; Department of Biology and Biotechnology 'L. Spallanzani', University of Paviagrid.8982.b, Pavia, Italy., Migliavacca R; Department of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Paviagrid.8982.b, Pavia, Italy.

Publikováno v: Microbiology spectrum [Microbiol Spectr] 2022 Jun 29; Vol. 10 (3), pp. e0083222. Date of Electronic Publication: 2022 Jun 06.