Zobrazeno 1 - 10
of 1 258
pro vyhledávání: '"Getz, G."'
Autor:
Rozovskaia, T., Ravid-Amir, O., Tillib, S., Getz, G., Feinstein, E., Agrawal, H., Nagler, A., Rappeport, E., Issaeva, I., Matsuo, Y., Kees, U. R., Lapidot, T., Coco, F. Lo, Foa, R., Mazo, A., Nakamura, T., Croce, C. M., Cimino, G., Domany, E., Canaani, E.
Publikováno v:
PNAS vol 100, p 7853 (2003)
The ALL-1 gene is directly involved in 5-10% of ALLs and AMLs by fusion to other genes or through internal rearrangements. DNA microarrays were utilized to determine expression profiles of ALLs and AMLs with ALL-1 rearrangements. These profiles disti
Externí odkaz:
http://arxiv.org/abs/q-bio/0511016
We present a novel coupled two-way clustering approach to gene microarray data analysis. The main idea is to identify subsets of the genes and samples, such that when one of these is used to cluster the other, stable and significant partitions emerge
Externí odkaz:
http://arxiv.org/abs/physics/0004009
Publikováno v:
Physica A 279 (2000) 457--464
High-density DNA arrays, used to monitor gene expression at a genomic scale, have produced vast amounts of information which require the development of efficient computational methods to analyze them. The important first step is to extract the fundam
Externí odkaz:
http://arxiv.org/abs/physics/9911038
Autor:
Rozovskaia, T., Ravid-Amir, O., Tillib, S., Getz, G., Feinstein, E., Agrawal, H., Nagler, A., Rappaport, E. F., Issaeva, I., Matsuo, Y., Kees, U. R., Lapidot, T., Lo Coco, F., Foa, R., Mazo, A., Nakamura, T., Croce, C. M., Cimino, G., Domany, E., Canaani, E.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2003 Jun . 100(13), 7853-7858.
Externí odkaz:
https://www.jstor.org/stable/3139836
Akademický článek
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Akademický článek
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Autor:
Gerstung, M., Jolly, C., Leshchiner, I., Dentro, S.C., Gonzalez, S., Rosebrock, D., Mitchell, T.J., Rubanova, Y., Anur, P., Yu, K., Tarabichi, M., Deshwar, A.G., Wintersinger, J., Kleinheinz, K., Vázquez-García, I., Haase, K., Jerman, L., Sengupta, Subhajit, Macintyre, G., Malikic, S., Donmez, N., Livitz, D.G., Cmero, M., Demeulemeester, J., Schumacher, S., Fan, Y., Yao, X., Lee, J., Schlesner, M., Boutros, P.C., Bowtell, D.D., Zhu, H., Getz, G., Imielinski, M., Beroukhim, R., Sahinalp, S.C., Ji, Y., Peifer, M., Markowetz, F., Mustonen, V., Yuan, K., Wang, W., Morris, Q.D., Adams, D.J., Campbell, P.J., Cao, S., Christie, E.L., Cun, Y., Dawson, K.J., Drews, R.M., Eils, R., Fittall, M., Garsed, D.W., Ha, G., Lee-Six, H., Martincorena, I., Oesper, L., Peto, M., Raphael, B.J., Salcedo, A., Sengupta, S., Shi, R., Shin, S.J., Spiro, O., Stein, L.D., Vembu, S., Wheeler, D.A., Yang, T.-P., Spellman, P.T., Wedge, D.C., Van Loo, P.
Publikováno v:
Nature, vol 578, iss 7793
Nature, 578, 122-128
Nature
Nature, 578, 7793, pp. 122-128
Gerstung, M, Jolly, C, Leshchiner, I, Dentro, S C, Gonzalez, S, Rosebrock, D, Mitchell, T J, Rubanova, Y, Anur, P, Yu, K, Tarabichi, M, Deshwar, A G, Wintersinger, J, Kleinheinz, K, Vázquez-García, I, Haase, K, Jerman, L, Sengupta, S, Macintyre, G, Malikic, S, Donmez, N, Livitz, D G, Cmero, M, Demeulemeester, J, Schumacher, S, Fan, Y, Yao, X, Lee, J, Schlesner, M, Boutros, P C, Bowtell, D D, Zhu, H, Getz, G, Imielinski, M, Beroukhim, R, Sahinalp, S C, Ji, Y, Peifer, M, Markowetz, F, Mustonen, V, Yuan, K, Wang, W, Morris, Q D, Dentro, S C, Leshchiner, I, Gerstung, M, Jolly, C, Haase, K, Tarabichi, M, Wintersinger, J, Deshwar, A G, Yu, K, Gonzalez, S, Rubanova, Y, Macintyre, G, Adams, D J, Anur, P, Beroukhim, R, Boutros, P C, Bowtell, D D, Campbell, P J, Cao, S, Christie, E L, Cmero, M, Cun, Y, Dawson, K J, Donmez, N, Drews, R M, Eils, R, Fan, Y, Fittall, M, Garsed, D W, Getz, G, Ha, G, Imielinski, M, Jerman, L, Ji, Y, Kleinheinz, K, Lee, J, Lee-Six, H, Livitz, D G, Malikic, S, Markowetz, F, Martincorena, I, Mitchell, T J, Mustonen, V, Oesper, L, Peifer, M, Peto, M, Raphael, B J, Rosebrock, D, Sahinalp, S C, Salcedo, A, Schlesner, M, Schumacher, S, Sengupta, S, Shi, R, Shin, S J, Spiro, O, Stein, L D, Vázquez-García, I, Vembu, S, Wheeler, D A, Yang, T-P, Yao, X, Yuan, K, Zhu, H, Wang, W, Morris, Q D, Spellman, P T, Wedge, D C, Van Loo, P, Spellman, P T & Wedge, D C 2020, ' The evolutionary history of 2,658 cancers ', Nature, vol. 578, no. 7793, pp. 122-128 . https://doi.org/10.1038/s41586-019-1907-7
Nature, 578, 122-128
Nature
Nature, 578, 7793, pp. 122-128
Gerstung, M, Jolly, C, Leshchiner, I, Dentro, S C, Gonzalez, S, Rosebrock, D, Mitchell, T J, Rubanova, Y, Anur, P, Yu, K, Tarabichi, M, Deshwar, A G, Wintersinger, J, Kleinheinz, K, Vázquez-García, I, Haase, K, Jerman, L, Sengupta, S, Macintyre, G, Malikic, S, Donmez, N, Livitz, D G, Cmero, M, Demeulemeester, J, Schumacher, S, Fan, Y, Yao, X, Lee, J, Schlesner, M, Boutros, P C, Bowtell, D D, Zhu, H, Getz, G, Imielinski, M, Beroukhim, R, Sahinalp, S C, Ji, Y, Peifer, M, Markowetz, F, Mustonen, V, Yuan, K, Wang, W, Morris, Q D, Dentro, S C, Leshchiner, I, Gerstung, M, Jolly, C, Haase, K, Tarabichi, M, Wintersinger, J, Deshwar, A G, Yu, K, Gonzalez, S, Rubanova, Y, Macintyre, G, Adams, D J, Anur, P, Beroukhim, R, Boutros, P C, Bowtell, D D, Campbell, P J, Cao, S, Christie, E L, Cmero, M, Cun, Y, Dawson, K J, Donmez, N, Drews, R M, Eils, R, Fan, Y, Fittall, M, Garsed, D W, Getz, G, Ha, G, Imielinski, M, Jerman, L, Ji, Y, Kleinheinz, K, Lee, J, Lee-Six, H, Livitz, D G, Malikic, S, Markowetz, F, Martincorena, I, Mitchell, T J, Mustonen, V, Oesper, L, Peifer, M, Peto, M, Raphael, B J, Rosebrock, D, Sahinalp, S C, Salcedo, A, Schlesner, M, Schumacher, S, Sengupta, S, Shi, R, Shin, S J, Spiro, O, Stein, L D, Vázquez-García, I, Vembu, S, Wheeler, D A, Yang, T-P, Yao, X, Yuan, K, Zhu, H, Wang, W, Morris, Q D, Spellman, P T, Wedge, D C, Van Loo, P, Spellman, P T & Wedge, D C 2020, ' The evolutionary history of 2,658 cancers ', Nature, vol. 578, no. 7793, pp. 122-128 . https://doi.org/10.1038/s41586-019-1907-7
Cancer develops through a process of somatic evolution1,2. Sequencing data from a single biopsy represent a snapshot of this process that can reveal the timing of specific genomic aberrations and the changing influence of mutational processes3. Here,
Autor:
Salcedo, A., Tarabichi, M., Espiritu, S.M.G., Deshwar, A.G., David, M., Wilson, N.M., Dentro, S., Wintersinger, J.A., Liu, L.Y., Ko, M., Sivanandan, S., Zhang, H., Zhu, K., Ou Yang, T.-H., Chilton, J.M., Buchanan, A., Lalansingh, C.M., P’ng, C., Anghel, C.V., Umar, I., Lo, B., Zou, W., Jha, A., Huang, T., Yang, T.-P., Peifer, M., Sahinalp, C., Malikic, S., Vázquez-García, I., Mustonen, V., Yang, H.-T., Lee, K.-R., Ji, Y., Sengupta, Subhajit, Rudewicz, J., Nikolski, M., Schaeverbeke, Q., Yuan, K., Markowetz, F., Macintyre, G., Cmero, M., Chaudhary, B., Leshchiner, I., Livitz, D., Getz, G., Loher, P., Yu, K., Wang, W., Zhu, H., Simpson, J.T., Stuart, J.M., Anastassiou, D., Guan, Y., Ewing, A.D., Ellrott, K., Wedge, D.C., Morris, Q., Van Loo, P., Boutros, P.C.
Publikováno v:
Nature biotechnology
Salcedo, A, Tarabichi, M, Espiritu, S M G, Deshwar, A G, David, M, Wilson, N M, Dentro, S, Wintersinger, J A, Liu, L Y, Ko, M, Sivanandan, S, Zhang, H, Zhu, K, Ou Yang, T-H, Chilton, J M, Buchanan, A, Lalansingh, C M, P’ng, C, Anghel, C V, Umar, I, Lo, B, Zou, W, Jha, A, Huang, T, Yang, T-P, Peifer, M, Sahinalp, C, Malikic, S, Vázquez-García, I, Mustonen, V, Yang, H-T, Lee, K-R, Ji, Y, Sengupta, S, Rudewicz, J, Nikolski, M, Schaeverbeke, Q, Yuan, K, Markowetz, F, Macintyre, G, Cmero, M, Chaudhary, B, Leshchiner, I, Livitz, D, Getz, G, Loher, P, Yu, K, Wang, W, Zhu, H, Simpson, J T, Stuart, J M, Anastassiou, D, Guan, Y, Ewing, A D, Ellrott, K, Wedge, D C, Morris, Q, Van Loo, P & Boutros, P C 2020, ' A community effort to create standards for evaluating tumor subclonal reconstruction ', Nature biotechnology, vol. 38, pp. 97-107 . https://doi.org/10.1038/s41587-019-0364-z
Nature Biotechnology
Nature Biotechnology, Nature Publishing Group, 2020, 38 (1), pp.97-107. ⟨10.1038/s41587-019-0364-z⟩
Salcedo, A, Tarabichi, M, Espiritu, S M G, Deshwar, A G, David, M, Wilson, N M, Dentro, S, Wintersinger, J A, Liu, L Y, Ko, M, Sivanandan, S, Zhang, H, Zhu, K, Ou Yang, T-H, Chilton, J M, Buchanan, A, Lalansingh, C M, P’ng, C, Anghel, C V, Umar, I, Lo, B, Zou, W, Jha, A, Huang, T, Yang, T-P, Peifer, M, Sahinalp, C, Malikic, S, Vázquez-García, I, Mustonen, V, Yang, H-T, Lee, K-R, Ji, Y, Sengupta, S, Rudewicz, J, Nikolski, M, Schaeverbeke, Q, Yuan, K, Markowetz, F, Macintyre, G, Cmero, M, Chaudhary, B, Leshchiner, I, Livitz, D, Getz, G, Loher, P, Yu, K, Wang, W, Zhu, H, Simpson, J T, Stuart, J M, Anastassiou, D, Guan, Y, Ewing, A D, Ellrott, K, Wedge, D C, Morris, Q, Van Loo, P & Boutros, P C 2020, ' A community effort to create standards for evaluating tumor subclonal reconstruction ', Nature biotechnology, vol. 38, pp. 97-107 . https://doi.org/10.1038/s41587-019-0364-z
Nature Biotechnology
Nature Biotechnology, Nature Publishing Group, 2020, 38 (1), pp.97-107. ⟨10.1038/s41587-019-0364-z⟩
Tumor DNA sequencing data can be interpreted by computational methods that analyse genomic heterogeneity to infer evolutionary dynamics. A growing number of studies have used these approaches to link cancer evolution with clinical progression and res
Autor:
Salvesen, H. B., Carter, S. L., Mannelqvist, M., Dutt, A., Getz, G., Stefansson, I. M., Raeder, M. B., Sos, M. L., Engelsen, I. B., Trovik, J., Wik, E., Greulich, H., Bø, T. H., Jonassen, I., Thomas, R. K., Zander, T., Garraway, L. A., Øyan, A. M., Sellers, W. R., Kalland, K. H., Meyerson, M., Akslen, L. A., Beroukhim, R., Gray, Joe W.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2009 Mar . 106(12), 4834-4839.
Externí odkaz:
https://www.jstor.org/stable/40441904