GaNDLF: A Generally Nuanced Deep Learning Framework for Scalable End-to-End Clinical Workflows in Medical Imaging

Autor: Pati, Sarthak, Thakur, Siddhesh P., Hamamcı, İbrahim Ethem, Baid, Ujjwal, Baheti, Bhakti, Bhalerao, Megh, Güley, Orhun, Mouchtaris, Sofia, Lang, David, Thermos, Spyridon, Gotkowski, Karol, González, Camila, Grenko, Caleb, Getka, Alexander, Edwards, Brandon, Sheller, Micah, Wu, Junwen, Karkada, Deepthi, Panchumarthy, Ravi, Ahluwalia, Vinayak, Zou, Chunrui, Bashyam, Vishnu, Li, Yuemeng, Haghighi, Babak, Chitalia, Rhea, Abousamra, Shahira, Kurc, Tahsin M., Gastounioti, Aimilia, Er, Sezgin, Bergman, Mark, Saltz, Joel H., Fan, Yong, Shah, Prashant, Mukhopadhyay, Anirban, Tsaftaris, Sotirios A., Menze, Bjoern, Davatzikos, Christos, Kontos, Despina, Karargyris, Alexandros, Umeton, Renato, Mattson, Peter, Bakas, Spyridon

Publikováno v: Commun Eng 2, 23 (2023)

Deep Learning (DL) has the potential to optimize machine learning in both the scientific and clinical communities. However, greater expertise is required to develop DL algorithms, and the variability of implementations hinders their reproducibility,

Externí odkaz: http://arxiv.org/abs/2103.01006

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

Autor: Afiaz A; Department of Biostatistics, University of Washington, Seattle, WA.; Biostatistics Program, Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA., Ivanov AA; Department of Pharmacology and Chemical Biology, Emory University School of Medicine, Emory University, Atlanta, GA., Chamberlin J; Department of Biomedical Informatics, University of Utah, Salt Lake City, UT., Hanauer D; Department of Learning Health Sciences, University of Michigan Medical School, Ann Arbor, MI., Savonen CL; Biostatistics Program, Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA., Goldman MJ; University of California Santa Cruz, Santa Cruz, CA., Morgan M; Roswell Park Comprehensive Cancer Center, Buffalo, NY., Reich M; University of California, San Diego, La Jolla, CA., Getka A; University of Pennsylvania, Philadelphia, PA., Holmes A; Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA.; Institute for Precision Health, University of California, Los Angeles, CA.; Department of Human Genetics, University of California, Los Angeles, CA.; Department of Urology, University of California, Los Angeles, CA., Pati S; University of Pennsylvania, Philadelphia, PA., Knight D; Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA.; Institute for Precision Health, University of California, Los Angeles, CA.; Department of Human Genetics, University of California, Los Angeles, CA.; Department of Urology, University of California, Los Angeles, CA., Boutros PC; Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA.; Institute for Precision Health, University of California, Los Angeles, CA.; Department of Human Genetics, University of California, Los Angeles, CA.; Department of Urology, University of California, Los Angeles, CA., Bakas S; University of Pennsylvania, Philadelphia, PA., Caporaso JG; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ., Del Fiol G; Department of Biomedical Informatics, University of Utah, Salt Lake City, UT., Hochheiser H; Department of Biomedical Informatics, University of Pittsburgh,Pittsburgh, PA., Haas B; Methods Development Laboratory, Broad Institute, Cambridge, MA., Schloss PD; Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI., Eddy JA; Sage Bionetworks, Seattle, WA., Albrecht J; Sage Bionetworks, Seattle, WA., Fedorov A; Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA., Waldron L; Department of Epidemiology and Biostatistics, City University of New York Graduate School of Public Health and Health Policy, New York, NY., Hoffman AM; Biostatistics Program, Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA., Bradshaw RL; Department of Biomedical Informatics, University of Utah, Salt Lake City, UT., Leek JT; Biostatistics Program, Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA., Wright C; Biostatistics Program, Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA.

Publikováno v: ArXiv [ArXiv] 2023 Jun 05. Date of Electronic Publication: 2023 Jun 05.