PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family

Autor: Lapp, SA, Geraldo, JA, Chien, J-T, Ay, F, Pakala, SB, Batugedara, G, Humphrey, J, MaHPIC consortium, DeBARRY, JD, Le Roch, KG, Galinski, MR, Kissinger, JC

Publikováno v: Parasitology, vol 145, iss 1

Plasmodium knowlesi has risen in importance as a zoonotic parasite that has been causing regular episodes of malaria throughout South East Asia. The P. knowlesi genome sequence generated in 2008 highlighted and confirmed many similarities and differe

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::9ec804a0de1117131a758630a7fc4ae8
https://escholarship.org/uc/item/3616g5cc

Schistosoma mansoni coactivator associated arginine methyltransferase 1 (SmCARM1) effect on parasite reproduction.

Autor: Coelho FS; Grupo de Pesquisa em Helmintologia e Malacologia Médica, Instituto René Rachou, Fundação Oswaldo Cruz-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil.; Department of Clinical Research, London School of Hygiene and Tropical Medicine, London, United Kingdom., Gava SG; Grupo de Pesquisa em Helmintologia e Malacologia Médica, Instituto René Rachou, Fundação Oswaldo Cruz-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil., Andrade LF; Grupo de Pesquisa em Helmintologia e Malacologia Médica, Instituto René Rachou, Fundação Oswaldo Cruz-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil., Geraldo JA; Grupo de Pesquisa em Helmintologia e Malacologia Médica, Instituto René Rachou, Fundação Oswaldo Cruz-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil., Tavares NC; Grupo de Pesquisa em Helmintologia e Malacologia Médica, Instituto René Rachou, Fundação Oswaldo Cruz-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil., Lunkes FMN; Grupo de Pesquisa em Helmintologia e Malacologia Médica, Instituto René Rachou, Fundação Oswaldo Cruz-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil., Neves RH; Laboratório de Helmintologia Romero Lascasas Porto, Departamento de Microbiologia, Imunologia e Parasitologia, Faculdade de Ciências Médicas, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil., Machado-Silva JR; Laboratório de Helmintologia Romero Lascasas Porto, Departamento de Microbiologia, Imunologia e Parasitologia, Faculdade de Ciências Médicas, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil., Pierce RJ; Université de Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019-UMR 9017-CIIL-Centre d'Infection et d'Immunité de Lille, Lille, France., Oliveira G; Grupo de Pesquisa em Helmintologia e Malacologia Médica, Instituto René Rachou, Fundação Oswaldo Cruz-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil.; Instituto Tecnológico Vale, Belém, Pará, Brazil., Mourão MM; Grupo de Pesquisa em Helmintologia e Malacologia Médica, Instituto René Rachou, Fundação Oswaldo Cruz-FIOCRUZ, Belo Horizonte, Minas Gerais, Brazil.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2023 Feb 24; Vol. 14, pp. 1079855. Date of Electronic Publication: 2023 Feb 24 (Print Publication: 2023).

Identifying Genotype-Phenotype Correlations via Integrative Mutation Analysis.

Autor: Airey E; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Portelli S; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Xavier JS; Instituto René Rachou, Fundação Oswaldo Cruz, Belo Horizonte, Brazil., Myung YC; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Silk M; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Karmakar M; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Velloso JPL; Instituto René Rachou, Fundação Oswaldo Cruz, Belo Horizonte, Brazil., Rodrigues CHM; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Parate HH; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Garg A; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Al-Jarf R; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Barr L; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia., Geraldo JA; Instituto René Rachou, Fundação Oswaldo Cruz, Belo Horizonte, Brazil., Rezende PM; Instituto René Rachou, Fundação Oswaldo Cruz, Belo Horizonte, Brazil., Pires DEV; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia. douglas.pires@unimelb.edu.au.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia. douglas.pires@unimelb.edu.au.; School of Computing and Information Systems, University of Melbourne, Melbourne, VIC, Australia. douglas.pires@unimelb.edu.au., Ascher DB; Structural Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia. david.ascher@unimelb.edu.au.; ACRF Facility for Innovative Cancer Drug Discovery, Bio21 Institute, University of Melbourne, Melbourne, VIC, Australia. david.ascher@unimelb.edu.au.; Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute, Melbourne, VIC, Australia. david.ascher@unimelb.edu.au.; Department of Biochemistry, Cambridge University, Cambridge, UK. david.ascher@unimelb.edu.au.

Publikováno v: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2190, pp. 1-32.

PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family.

Autor: Lapp SA; Emory Vaccine Center,Yerkes National Primate Research Center,Emory University,Atlanta, GA,USA., Geraldo JA; Federal University of Minas Gerais,Belo Horizonte, MG,Brazil., Chien JT; Emory Vaccine Center,Yerkes National Primate Research Center,Emory University,Atlanta, GA,USA., Ay F; La Jolla Institute for Allergy and Immunology,La Jolla, CA 92037,USA., Pakala SB; Institute of Bioinformatics, University of Georgia,Athens, GA 30602,USA., Batugedara G; Center for Disease and Vector Research,Institute for Integrative Genome Biology,Department of Cell Biology & Neuroscience,University of California Riverside,CA 92521,USA., Humphrey J; Institute of Bioinformatics, University of Georgia,Athens, GA 30602,USA., DeBARRY JD; Institute of Bioinformatics, University of Georgia,Athens, GA 30602,USA., Le Roch KG; Center for Disease and Vector Research,Institute for Integrative Genome Biology,Department of Cell Biology & Neuroscience,University of California Riverside,CA 92521,USA., Galinski MR; Emory Vaccine Center,Yerkes National Primate Research Center,Emory University,Atlanta, GA,USA., Kissinger JC; Institute of Bioinformatics, University of Georgia,Athens, GA 30602,USA.

Publikováno v: Parasitology [Parasitology] 2018 Jan; Vol. 145 (1), pp. 71-84. Date of Electronic Publication: 2017 Jul 19.

ZIKV - CDB: A Collaborative Database to Guide Research Linking SncRNAs and ZIKA Virus Disease Symptoms.

Autor: Pylro VS; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil., Oliveira FS; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil., Morais DK; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil., Cuadros-Orellana S; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil., Pais FS; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil., Medeiros JD; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil., Geraldo JA; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil., Gilbert J; Department of Ecology and Evolution, The University of Chicago, Chicago, Illinois, United States of America.; Argonne National Laboratory, Institute for Genomic and Systems Biology, Argonne, Illinois, United States of America.; Department of Surgery, The University of Chicago, Chicago, Illinois, United States of America., Volpini AC; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil., Fernandes GR; Biosystems Informatics and Genomics Group, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil.

Publikováno v: PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2016 Jun 22; Vol. 10 (6), pp. e0004817. Date of Electronic Publication: 2016 Jun 22 (Print Publication: 2016).