Genomic analyses of

Autor: Chandler, Roe, Marc, Stegger, Berit, Lilje, Thor Bech, Johannesen, Kim Lee, Ng, Raphael N, Sieber, Elizabeth, Driebe, David M, Engelthaler, Paal Skytt, Andersen

Publikováno v: Microbial Genomics

Staphylococcus aureus is a colonizing opportunistic pathogen and a leading cause of bloodstream infection with high morbidity and mortality. S. aureus carriage frequency is reportedly between 20 and 40 % among healthy adults, with S. aureus colonizat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::f2fca5ce536065b3893baf8d7e369522
https://pubmed.ncbi.nlm.nih.gov/32667872

AB_SA: Accessory genes-Based Source Attribution - tracing the source of

Autor: Michèle Gourmelon, Tine Hald, Marie-Léone Vignaud, Nanna Sophia Mucha Munck, Sabrina Cadel-Six, Federica Palma, Solen Lozach, Laurent Guillier

Publikováno v: Microbial Genomics
Guillier, L, Gourmelon, M, Lozach, S, Cadel-Six, S, Vignaud, M-L, Munck, N S M, Hald, T & Palma, F 2020, ' AB_SA: Accessory genes-Based Source Attribution – tracing the source of Salmonella enterica Typhimurium environmental strains ', Microbial genomics, vol. 6, no. 7, 000366 . https://doi.org/10.1099/mgen.0.000366
Microbial Genomics (2057-5858) (Microbiology Society), 2020-07, Vol. 6, N. 7, P. 10p.

The partitioning of pathogenic strains isolated in environmental or human cases to their sources is challenging. The pathogens usually colonize multiple animal hosts, including livestock, which contaminate the food-production chain and the environmen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3c589a16595e8ff0aea09bff2fd34a68
https://pubmed.ncbi.nlm.nih.gov/32320376

Identification of genes required for the fitness of

Autor: Amelia R L, Charbonneau, Emma, Taylor, Catriona J, Mitchell, Carl, Robinson, Amy K, Cain, James A, Leigh, Duncan J, Maskell, Andrew S, Waller

Publikováno v: Microbial Genomics

The availability of next-generation sequencing techniques provides an unprecedented opportunity for the assignment of gene function. Streptococcus equi subspecies equi is the causative agent of strangles in horses, one of the most prevalent and impor

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::91db360ddaab74263930ac1541337cbf
https://pubmed.ncbi.nlm.nih.gov/32228801

Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes

Autor: B. Jesse Shapiro, Morteza M. Saber

Publikováno v: Microbial Genomics

Genome-wide association studies (GWASs) have the potential to reveal the genetics of microbial phenotypes such as antibiotic resistance and virulence. Capitalizing on the growing wealth of bacterial sequence data, microbial GWAS methods aim to identi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2823eafd7f1f4bfda51cd9f5828675db
https://doi.org/10.1099/mgen.0.000337

A window into lysogeny: Revealing temperate phage biology with transcriptomics

Autor: Siân V. Owen, Nicolas Wenner, Jay C. D. Hinton, Rocío Canals, Disa L. Hammarlöf, Carsten Kröger

Publikováno v: Microbial Genomics

Integrated phage elements, known as prophages, are a pervasive feature of bacterial genomes. Prophages can enhance the fitness of their bacterial hosts by conferring beneficial functions, such as virulence, stress tolerance or phage resistance, which

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d33c3d0030deb68e5aefc1064b2eed7f
https://doi.org/10.1101/787010