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Publikováno v:
Human Molecular Genetics. 31(R1):73-83
Genome-wide association studies (GWAS) have found the majority of disease-associated variants to be non-coding. Major efforts into the charting of the non-coding regulatory landscapes have allowed for the development of tools and methods which aim to
Publikováno v:
Yu, X, Lophatananon, A, Mekli, K, Muir, K & Guo, H 2023, ' Exploring the causal role of the immune response to varicella-zoster virus on multiple traits: a phenome-wide Mendelian randomization study ', BMC Medicine, vol. 21, no. 1, 143 . https://doi.org/10.1186/s12916-023-02843-5
Background The immune response to infections could be largely driven by the individual’s genes, especially in the major histocompatibility complex (MHC) region. Varicella-zoster virus (VZV) is a highly communicable pathogen. In addition to infectio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c0b04981c1fbea01f3c0ff2c7ecc8e87
https://doi.org/10.1186/s12916-023-02843-5
https://doi.org/10.1186/s12916-023-02843-5
Autor:
Chiara Auwerx, Marie C Sadler, Tristan Woh, Alexandre Reymond, Zoltán Kutalik, Eleonora Porcu
Publikováno v:
eLife, vol. 12, pp. e81097
Despite the success of genome-wide association studies (GWASs) in identifying genetic variants associated with complex traits, understanding the mechanisms behind these statistical associations remains challenging. Several methods that integrate meth
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cc79d24365a50dc2c0b676e22a76959c
https://serval.unil.ch/resource/serval:BIB_33296666D7F5.P001/REF.pdf
https://serval.unil.ch/resource/serval:BIB_33296666D7F5.P001/REF.pdf
Autor:
Mueller, Stefanie H, Lai, Alvina G, Valkovskaya, Maria, Michailidou, Kyriaki, Bolla, Manjeet K, Wang, Qin, Dennis, Joe, Lush, Michael, Abu-Ful, Zomoruda, Ahearn, Thomas U, Andrulis, Irene L, Anton-Culver, Hoda, Antonenkova, Natalia N, Arndt, Volker, Aronson, Kristan J, Augustinsson, Annelie, Baert, Thais, Freeman, Laura E Beane, Beckmann, Matthias W, Behrens, Sabine, Benitez, Javier, Bermisheva, Marina, Blomqvist, Carl, Bogdanova, Natalia V, Bojesen, Stig E, Bonanni, Bernardo, Brenner, Hermann, Brucker, Sara Y, Buys, Saundra S, Castelao, Jose E, Chan, Tsun L, Chang-Claude, Jenny, Chanock, Stephen J, Choi, Ji-Yeob, Chung, Wendy K, Sahlberg, Kristine K, Børresen-Dale, Anne-Lise, Ottestad, Lars, Kåresen, Rolf, Schlichting, Ellen, Holmen, Marit Muri, Sauer, Toril, Haakensen, Vilde, Engebråten, Olav, Naume, Bjørn, Fosså, Alexander, Kiserud, Cecile E, Reinertsen, Kristin V, Helland, Åslaug, Riis, Margit, Geisler, Jürgen, Grenaker Alnaes, Grethe I, Colonna, Sarah V, Cornelissen, Sten, Couch, Fergus J, Czene, Kamila, Daly, Mary B, Devilee, Peter, Dörk, Thilo, Dossus, Laure, Dwek, Miriam, Eccles, Diana M, Ekici, Arif B, Eliassen, A Heather, Engel, Christoph, Evans, D Gareth, Fasching, Peter A, Fletcher, Olivia, Flyger, Henrik, Gago-Dominguez, Manuela, Gao, Yu-Tang, García-Closas, Montserrat, García-Sáenz, José A, Genkinger, Jeanine, Gentry-Maharaj, Aleksandra, Grassmann, Felix, Guénel, Pascal, Gündert, Melanie, Haeberle, Lothar, Hahnen, Eric, Haiman, Christopher A, Håkansson, Niclas, Hall, Per, Harkness, Elaine F, Harrington, Patricia A, Hartikainen, Jaana M, Hartman, Mikael, Hein, Alexander, Ho, Weang-Kee, Hooning, Maartje J, Hoppe, Reiner, Hopper, John L, Houlston, Richard S, Howell, Anthony, Hunter, David J, Huo, Dezheng, Marsh, Deborah, Scott, Rodney, Baxter, Robert, Yip, Desmond, Carpenter, Jane, Davis, Alison, Pathmanathan, Nirmala, Simpson, Peter, Graham, Dinny, Sachchithananthan, Mythily, Ito, Hidemi, Iwasaki, Motoki, Jakubowska, Anna, Janni, Wolfgang, John, Esther M, Jones, Michael E, Jung, Audrey, Kaaks, Rudolf, Kang, Daehee, Khusnutdinova, Elza K, Kim, Sung-Won, Kitahara, Cari M, Koutros, Stella, Kraft, Peter, Kristensen, Vessela N, Kubelka-Sabit, Katerina, Kurian, Allison W, Kwong, Ava, Lacey, James V, Lambrechts, Diether, Le Marchand, Loic, Li, Jingmei, Linet, Martha, Lo, Wing-Yee, Long, Jirong, Lophatananon, Artitaya, Mannermaa, Arto, Manoochehri, Mehdi, Margolin, Sara, Matsuo, Keitaro, Mavroudis, Dimitrios, Menon, Usha, Muir, Kenneth, Murphy, Rachel A, Nevanlinna, Heli, Newman, William G, Niederacher, Dieter, O’Brien, Katie M, Obi, Nadia, Offit, Kenneth, Olopade, Olufunmilayo I, Olshan, Andrew F, Olsson, Håkan, Park, Sue K, Patel, Alpa V, Patel, Achal, Perou, Charles M, Peto, Julian, Pharoah, Paul DP, Plaseska-Karanfilska, Dijana, Presneau, Nadege, Rack, Brigitte, Radice, Paolo, Ramachandran, Dhanya, Rashid, Muhammad U, Rennert, Gad, Romero, Atocha, Ruddy, Kathryn J, Ruebner, Matthias, Saloustros, Emmanouil, Sandler, Dale P, Sawyer, Elinor J, Schmidt, Marjanka K, Schmutzler, Rita K, Schneider, Michael O, Scott, Christopher, Shah, Mitul, Sharma, Priyanka, Shen, Chen-Yang, Shu, Xiao-Ou, Simard, Jacques, Surowy, Harald, Tamimi, Rulla M, Tapper, William J, Taylor, Jack A, Teo, Soo Hwang, Teras, Lauren R, Toland, Amanda E, Tollenaar, Rob AEM, Torres, Diana, Torres-Mejía, Gabriela, Troester, Melissa A, Truong, Thérèse, Vachon, Celine M, Vijai, Joseph, Weinberg, Clarice R, Wendt, Camilla, Winqvist, Robert, Wolk, Alicja, Wu, Anna H, Yamaji, Taiki, Yang, Xiaohong R, Yu, Jyh-Cherng, Zheng, Wei, Ziogas, Argyrios, Ziv, Elad, Dunning, Alison M, Easton, Douglas F, Hemingway, Harry, Hamann, Ute, Kuchenbaecker, Karoline B
Publikováno v:
NBCS Collaborators, Mueller, S H, Lai, A G, Valkovskaya, M, Michailidou, K, Bolla, M K, Wang, Q, Dennis, J, Lush, M, Abu-Ful, Z, Ahearn, T U, Andrulis, I L, Anton-Culver, H, Antonenkova, N N, Arndt, V, Aronson, K J, Augustinsson, A, Baert, T, Freeman, L E B, Beckmann, M W, Behrens, S, Benitez, J, Bermisheva, M, Blomqvist, C, Bogdanova, N V, Bojesen, S E, Bonanni, B, Brenner, H, Brucker, S Y, Buys, S S, Castelao, J E, Chan, T L, Chang-Claude, J, Chanock, S J, Choi, J-Y, Chung, W K, Colonna, S V, Cornelissen, S, Couch, F J, Evans, D G, Harkness, E F, Howell, A, Jones, M E, Lo, W-Y, Lophatananon, A, Muir, K, Newman, W G, Patel, A V, Scott, C, Shen, C-Y & Zheng, W 2023, ' Aggregation tests identify new gene associations with breast cancer in populations with diverse ancestry ', Genome Medicine, vol. 15, no. 1, 7, pp. 7 . https://doi.org/10.1186/s13073-022-01152-5
Genome Medicine, 15(1):7. BioMed Central Ltd.
Genome Medicine, 15(1):7. BioMed Central Ltd.
Background Low-frequency variants play an important role in breast cancer (BC) susceptibility. Gene-based methods can increase power by combining multiple variants in the same gene and help identify target genes. Methods We evaluated the potential of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::04bf1402280d114c73d412955bab3932
Autor:
Marijn Schipper, Danielle Posthuma
Publikováno v:
Schipper, M & Posthuma, D 2022, ' Demystifying non-coding GWAS variants : an overview of computational tools and methods ', Human molecular genetics, vol. 31, no. R1, pp. R73-R83 . https://doi.org/10.1093/hmg/ddac198
Schipper, M & Posthuma, D 2022, ' Demystifying non-coding GWAS variants : an overview of computational tools and methods ', Human Molecular Genetics, vol. 31, no. R1, pp. R73-R83 . https://doi.org/10.1093/hmg/ddac198
Schipper, M & Posthuma, D 2022, ' Demystifying non-coding GWAS variants : an overview of computational tools and methods ', Human Molecular Genetics, vol. 31, no. R1, pp. R73-R83 . https://doi.org/10.1093/hmg/ddac198
Genome-wide association studies (GWAS) have found the majority of disease-associated variants to be non-coding. Major efforts into the charting of the non-coding regulatory landscapes have allowed for the development of tools and methods which aim to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6572a34c68ecc826e25ced4ae1ab8e9a
https://hdl.handle.net/1871.1/b18cc308-15e0-4785-8b0c-6e551ef676e5
https://hdl.handle.net/1871.1/b18cc308-15e0-4785-8b0c-6e551ef676e5
Autor:
Elleke Tissink, Siemon C. de Lange, Jeanne E. Savage, Douglas P. Wightman, Christiaan A. de Leeuw, Kristen M. Kelly, Mats Nagel, Martijn P. van den Heuvel, Danielle Posthuma
Publikováno v:
Tissink, E, de Lange, S C, Savage, J E, Wightman, D P, de Leeuw, C A, Kelly, K M, Nagel, M, van den Heuvel, M P & Posthuma, D 2022, ' Genome-wide association study of cerebellar volume provides insights into heritable mechanisms underlying brain development and mental health ', Communications biology, vol. 5, 710, pp. 1-12 . https://doi.org/10.1038/s42003-022-03672-7
Communications Biology, 5(1). Nature Research
Communications biology, 5:710, 1-12. Nature Research
Tissink, E, de Lange, S C, Savage, J E, Wightman, D P, de Leeuw, C A, Kelly, K M, Nagel, M, van den Heuvel, M P & Posthuma, D 2022, ' Genome-wide association study of cerebellar volume provides insights into heritable mechanisms underlying brain development and mental health ', Communications Biology, vol. 5, no. 1, 710 . https://doi.org/10.1038/s42003-022-03672-7
Communications Biology, 5(1):710. Springer Nature
Communications biology, 5(1). Nature Research
Communications Biology, 5(1). Nature Research
Communications biology, 5:710, 1-12. Nature Research
Tissink, E, de Lange, S C, Savage, J E, Wightman, D P, de Leeuw, C A, Kelly, K M, Nagel, M, van den Heuvel, M P & Posthuma, D 2022, ' Genome-wide association study of cerebellar volume provides insights into heritable mechanisms underlying brain development and mental health ', Communications Biology, vol. 5, no. 1, 710 . https://doi.org/10.1038/s42003-022-03672-7
Communications Biology, 5(1):710. Springer Nature
Communications biology, 5(1). Nature Research
Cerebellar volume is highly heritable and associated with neurodevelopmental and neurodegenerative disorders. Understanding the genetic architecture of cerebellar volume may improve our insight into these disorders. This study aims to investigate the
Autor:
Jordi Sunyer, Caroline L Relton, Marta Cosín-Tomás, Matthew Suderman, Stefan Röder, Marinus H. van IJzendoorn, Gunda Herberth, Ana Claudia Zenclussen, Esther Walton, Charlotte A.M. Cecil, Alan J. Meehan, Rosa H. Mulder, Marian J. Bakermans-Kranenburg, Edward D. Barker, Andrea P. Cortes Hidalgo, Janine F. Felix, Irene Pappa, Rianne Kok, Henning Tiemeier, Mannan Luo
Publikováno v:
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
Luo, M, Meehan, A J, Walton, E, Röder, S, Herberth, G, Zenclussen, A C, Cosín-Tomás, M, Sunyer, J, Mulder, R H, Cortes Hidalgo, A P, Bakermans-Kranenburg, M J, Felix, J F, Relton, C, Suderman, M, Pappa, I, Kok, R, Tiemeier, H, van IJzendoorn, M H, Barker, E D & Cecil, C A M 2021, ' Neonatal DNA methylation and childhood low prosocial behavior : An epigenome-wide association meta-analysis ', American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, vol. 186, no. 4, pp. 228-241 . https://doi.org/10.1002/ajmg.b.32862
American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, 186(4), 228-241. Wiley-Liss Inc.
Luo, M, Meehan, A J, Walton, E, Röder, S, Herberth, G, Zenclussen, A C, Cosín-Tomás, M, Sunyer, J, Mulder, R H, Cortes Hidalgo, A P, Bakermans-Kranenburg, M J, Felix, J F, Relton, C, Suderman, M, Pappa, I, Kok, R, Tiemeier, H, van IJzendoorn, M H, Barker, E D & Cecil, C A M 2021, ' Neonatal DNA methylation and childhood low prosocial behavior : An epigenome-wide association meta-analysis ', American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, vol. 186, no. 4, pp. 228-241 . https://doi.org/10.1002/ajmg.b.32862
American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, 186(4), 228-241. Wiley-Liss Inc.
Low prosocial behavior in childhood has been consistently linked to later psychopathology, with evidence supporting the influence of both genetic and environmental factors on its development. Although neonatal DNA methylation (DNAm) has been found to
Autor:
Nisha Singh, Ritu Batra, Amanda J. Burridge, Keith J. Edwards, Preman R. Soumya, Sanjay Kalia, Vandana Rai, Renu Pandey
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-17 (2021)
Scientific Reports
Soumya, P R, Burridge, A J, Singh, N, Batra, R, Pandey, R, Kalia, S, Rai, V & Edwards, K J 2021, ' Population structure and genome-wide association studies in bread wheat for phosphorus efficiency traits using 35 K Wheat Breeder's Affymetrix array ', Scientific Reports, vol. 11, no. 1, pp. 7601 . https://doi.org/10.1038/s41598-021-87182-2
Scientific Reports
Soumya, P R, Burridge, A J, Singh, N, Batra, R, Pandey, R, Kalia, S, Rai, V & Edwards, K J 2021, ' Population structure and genome-wide association studies in bread wheat for phosphorus efficiency traits using 35 K Wheat Breeder's Affymetrix array ', Scientific Reports, vol. 11, no. 1, pp. 7601 . https://doi.org/10.1038/s41598-021-87182-2
Soil bioavailability of phosphorus (P) is a major concern for crop productivity worldwide. As phosphatic fertilizers are a non-renewable resource associated with economic and environmental issues so, the sustainable option is to develop P use efficie
Autor:
Stian Knappskog, Merete Bjørnslett, Liv Beathe Gansmo, Lars J. Vatten, Pål Richard Romundstad, Kristian Hveem, Anne Dørum, Reham Helwa, Per Eystein Lønning, Mari K. Halle, Henrica M.J. Werner
Publikováno v:
Biomarkers, 26(4), 302-308. Routledge/Taylor & Francis Group
Biomarkers
Biomarkers
BACKGROUND: While large GWAS analyses have not found convincing associations between MDM2 promoter SNP55 and gynaecological cancers, SNP55 is in linkage disequilibrium with two other functional SNPs in the same promoter, likely to obscure association