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GSearch: Ultra-Fast and Scalable Microbial Genome Search by Combining Kmer Hashing with Hierarchical Navigable Small World Graphs

Autor: Jianshu Zhao, Jean Pierre Both, Luis M. Rodriguez-R, Konstantinos T. Konstantinidis

Genome search and/or classification is a key step in microbiome studies and has recently become more challenging due to the increasing number of available (reference) genomes and the fact that traditional methods do not scale well with larger databas

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::adaa6f060bd4b95e1128ee42aaf60967
https://doi.org/10.1101/2022.10.21.513218

Viral genome search in myocardium of patients with fulminant myocarditis

Autor: Alberto Foà, Victor Garcia-Hernando, Michela Brambatti, Hiroaki Shimokawa, Paola Sormani, Anuradha Lala, Sean Pinney, Duccio Petrella, Maria Frigerio, Gianfranco Sinagra, Valentina Agostini, Matthieu Schmidt, Piero Gentile, Akihiro Isotani, Enrico Ammirati, Enrico Fabris, Ornella Leone, Luciano Potena, Sherin Hashem, Barry H. Greenberg, Santiago Montero, Jessica Artico, Caroline M. Van De Heyning, Giacomo Veronese, Marco Merlo, Alessandro Sionis, Palak Shah, Emeline M. Van Craenenbroeck, Florent Huang, Claudia Raineri, Yoh Arita, Tatsuo Aoki, Fabrizio Oliva, Akinori Sawamura, Manlio Cipriani, Koichiro Sugimura, Marisa Varrenti, Oscar Ö. Braun, Eric Adler, Paolo G. Camici, Toyoaki Murohara, Andrea Garascia, Takahiro Okumura, Kimberly N. Hong, Kaoru Hirose, Rajiv Patel

Publikováno v: EUROPEAN JOURNAL OF HEART FAILURE
r-IIB SANT PAU. Repositorio Institucional de Producción Científica del Instituto de Investigación Biomédica Sant Pau
instname
European journal of heart failure
European Journal of Heart Failure
European Journal of Heart Failure, Oxford University Press (OUP), 2020, 22 (7), pp.1277-1280. ⟨10.1002/ejhf.1738⟩

[No abstract available]

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::81199656e1b257c2fa9b8e5e59913716
http://hdl.handle.net/11368/2962737

Sex stratification of an inflammatory bowel disease genome search shows male-specific linkage to the HLA region of chromosome 6.

Autor: Fisher, Sheila A., Hampe, Jochen, Macpherson, Andrew J.S., Forbes, Alastair, Lennard-Jones, John E., Schreiber, Stefan, Curran, Mark E., Mathew, Christopher G., Lewis, Cathryn M.

Publikováno v: European Journal of Human Genetics. Apr2002, Vol. 10 Issue 4, p259. 7p.