Zobrazeno 1 - 10
of 126
pro vyhledávání: '"Geer, Lewis Y."'
The Kov\'ats Retention index (RI) is a quantity measured using gas chromatography and commonly used in the identification of chemical structures. Creating libraries of observed RI values is a laborious task, so we explore the use of a deep neural net
Externí odkaz:
http://arxiv.org/abs/2401.01506
The unbounded permutations of biological molecules, including proteins and their constituent peptides, presents a dilemma in identifying the components of complex biosamples. Sequence search algorithms used to identify peptide spectra can be expanded
Externí odkaz:
http://arxiv.org/abs/2305.09513
This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of mutations. We call this method SEQR for SEQuence Retrieval. This approach increases the speed of s
Externí odkaz:
http://arxiv.org/abs/1811.00931
Autor:
Geer, Lewis Y., Markey, Sanford P., Kowalak, Jeffrey A., Wagner, Lukas, Xu, Ming, Maynard, Dawn M., Yang, Xiaoyu, Shi, Wenyao, Bryant, Stephen H.
Large numbers of MS/MS peptide spectra generated in proteomics experiments require efficient, sensitive and specific algorithms for peptide identification. In the Open Mass Spectrometry Search Algorithm [OMSSA], specificity is calculated by a classic
Externí odkaz:
http://arxiv.org/abs/q-bio/0406002
Akademický článek
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Autor:
Chi, An, Huttenhower, Curtis, Geer, Lewis Y., Coon, Joshua J., Syka, John E. P., Bai, Dina L., Shabanowitz, Jeffrey, Burke, Daniel J., Troyanskaya, Olga G., Hunt, Donald F.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2007 Feb . 104(7), 2193-2198.
Externí odkaz:
https://www.jstor.org/stable/25426447
Publikováno v:
In International Journal of Mass Spectrometry 2007 259(1):197-203
Akademický článek
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Autor:
Agarwala, Richa, Barrett, Tanya, Beck, Jeff, Benson, Dennis A, Bollin, Colleen, Bolton, Evan, Bourexis, Devon, Brister, J Rodney, Bryant, Stephen H, Canese, Kathi, Cavanaugh, Mark, Charowhas, Chad, Clark, Karen, Dondoshansky, Ilya, Feolo, Michael, Fitzpatrick, Lawrence, Funk, Kathryn, Geer, Lewis Y, Gorelenkov, Viatcheslav, Graeff, Alan, Hlavina, Wratko, Holmes, Brad, Johnson, Mark, Kattman, Brandi, Khotomlianski, Viatcheslav, Kimchi, Avi, Kimelman, Michael, Kimura, Masato, Kitts, Paul, Klimke, William, Kotliarov, Alex, Krasnov, Sergey, Kuznetsov, Anatoliy, Landrum, Melissa J, Landsman, David, Lathrop, Stacy, Lee, Jennifer M, Leubsdorf, Carl, Lu, Zhiyong, Madden, Thomas L, Marchler-Bauer, Aron, Malheiro, Adriana, Meric, Peter, Karsch-Mizrachi, Ilene, Mnev, Anatoly, Murphy, Terence, Orris, Rebecca, Ostell, James, O'Sullivan, Christopher, Palanigobu, Vasuki, Panchenko, Anna R, Phan, Lon, Pierov, Borys, Pruitt, Kim D, Rodarmer, Kurt, Sayers, Eric W, Schneider, Valerie, Schoch, Conrad L, Schuler, Gregory D, Sherry, Stephen T, Siyan, Karanjit, Soboleva, Alexandra, Soussov, Vladimir, Starchenko, Grigory, Tatusova, Tatiana A, Thibaud-Nissen, Francoise, Todorov, Kamen, Trawick, Bart W, Vakatov, Denis, Ward, Minghong, Yaschenko, Eugene, Zasypkin, Aleksandr, Zbicz, Kerry
Publikováno v:
Nucleic Acids Research
The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstracts for pub
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cfb2eb06fd347e3bca0c92a0f5b46bde
https://doi.org/10.1093/nar/gkx1095
https://doi.org/10.1093/nar/gkx1095
Target enhanced 2D similarity search by using explicit biological activity annotations and profiles.
Publikováno v:
Journal of Cheminformatics. 11/17/2015, Vol. 7, p1-12. 12p.