Pronounced early differentiation underlies zebra finch gonadal germ cell development.

Autor: Biegler MT; The Rockefeller University, New York NY, USA. Electronic address: mbiegler@rockefeller.edu., Belay K; The Rockefeller University, New York NY, USA., Wang W; The Rockefeller University, New York NY, USA., Szialta C; The Rockefeller University, New York NY, USA., Collier P; Weill Cornell Medicine, New York NY, USA., Luo JD; The Rockefeller University, New York NY, USA., Haase B; The Rockefeller University, New York NY, USA., Gedman GL; The Rockefeller University, New York NY, USA., Sidhu AV; The Rockefeller University, New York NY, USA., Harter E; The Rockefeller University, New York NY, USA., Rivera-López C; Harvard University, Cambridge, MA, USA., Amoako-Boadu K; New York University, New York NY, USA., Fedrigo O; The Rockefeller University, New York NY, USA., Tilgner HU; Weill Cornell Medicine, New York NY, USA., Carroll T; The Rockefeller University, New York NY, USA., Jarvis ED; The Rockefeller University, New York NY, USA; Howard Hughes Medical Institute, Chevy Chase, MD, USA. Electronic address: ejarvis@rockefeller.edu., Keyte AL; The Rockefeller University, New York NY, USA. Electronic address: anna@colossal.com.

Publikováno v: Developmental biology [Dev Biol] 2024 Aug 28; Vol. 517, pp. 73-90. Date of Electronic Publication: 2024 Aug 28.

Towards complete and error-free genome assemblies of all vertebrate species.

Autor: Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., McCarthy SA; Department of Genetics, University of Cambridge, Cambridge, UK.; Wellcome Sanger Institute, Cambridge, UK., Fedrigo O; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Damas J; The Genome Center, University of California Davis, Davis, CA, USA., Formenti G; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Uliano-Silva M; Leibniz Institute for Zoo and Wildlife Research, Department of Evolutionary Genetics, Berlin, Germany.; Berlin Center for Genomics in Biodiversity Research, Berlin, Germany., Chow W; Wellcome Sanger Institute, Cambridge, UK., Fungtammasan A; DNAnexus Inc., Mountain View, CA, USA., Kim J; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea., Lee C; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea., Ko BJ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea., Chaisson M; University of Southern California, Los Angeles, CA, USA., Gedman GL; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Cantin LJ; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA., Haggerty L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Bista I; Department of Genetics, University of Cambridge, Cambridge, UK.; Wellcome Sanger Institute, Cambridge, UK., Smith M; Wellcome Sanger Institute, Cambridge, UK., Haase B; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Mountcastle J; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Winkler S; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.; DRESDEN-concept Genome Center, Dresden, Germany., Paez S; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Howard J; Novogene, Durham, NC, USA., Vernes SC; Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, The Netherlands.; Donders Institute for Brain, Cognition and Behaviour, Nijmegen, The Netherlands.; School of Biology, University of St Andrews, St Andrews, UK., Lama TM; University of Massachusetts Cooperative Fish and Wildlife Research Unit, Amherst, MA, USA., Grutzner F; School of Biological Science, The Environment Institute, University of Adelaide, Adelaide, South Australia, Australia., Warren WC; Bond Life Sciences Center, University of Missouri, Columbia, MO, USA., Balakrishnan CN; Department of Biology, East Carolina University, Greenville, NC, USA., Burt D; UQ Genomics, University of Queensland, Brisbane, Queensland, Australia., George JM; Department of Biological Sciences, Clemson University, Clemson, SC, USA., Biegler MT; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Iorns D; The Genetic Rescue Foundation, Wellington, New Zealand., Digby A; Kākāpō Recovery, Department of Conservation, Invercargill, New Zealand., Eason D; Kākāpō Recovery, Department of Conservation, Invercargill, New Zealand., Robertson B; Department of Zoology, University of Otago, Dunedin, New Zealand., Edwards T; University of Arizona Genetics Core, Tucson, AZ, USA., Wilkinson M; Department of Life Sciences, Natural History Museum, London, UK., Turner G; School of Natural Sciences, Bangor University, Gwynedd, UK., Meyer A; Department of Biology, University of Konstanz, Konstanz, Germany., Kautt AF; Department of Biology, University of Konstanz, Konstanz, Germany.; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA., Franchini P; Department of Biology, University of Konstanz, Konstanz, Germany., Detrich HW 3rd; Department of Marine and Environmental Sciences, Northeastern University Marine Science Center, Nahant, MA, USA., Svardal H; Department of Biology, University of Antwerp, Antwerp, Belgium.; Naturalis Biodiversity Center, Leiden, The Netherlands., Wagner M; Institute of Biology, Karl-Franzens University of Graz, Graz, Austria., Naylor GJP; Florida Museum of Natural History, University of Florida, Gainesville, FL, USA., Pippel M; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.; Center for Systems Biology, Dresden, Germany., Malinsky M; Wellcome Sanger Institute, Cambridge, UK.; Zoological Institute, University of Basel, Basel, Switzerland., Mooney M; Tag.bio, San Francisco, CA, USA., Simbirsky M; DNAnexus Inc., Mountain View, CA, USA., Hannigan BT; DNAnexus Inc., Mountain View, CA, USA., Pesout T; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Houck M; San Diego Zoo Global, Escondido, CA, USA., Misuraca A; San Diego Zoo Global, Escondido, CA, USA., Kingan SB; Pacific Biosciences, Menlo Park, CA, USA., Hall R; Pacific Biosciences, Menlo Park, CA, USA., Kronenberg Z; Pacific Biosciences, Menlo Park, CA, USA., Sović I; Pacific Biosciences, Menlo Park, CA, USA.; Digital BioLogic, Ivanić-Grad, Croatia., Dunn C; Pacific Biosciences, Menlo Park, CA, USA., Ning Z; Wellcome Sanger Institute, Cambridge, UK., Hastie A; Bionano Genomics, San Diego, CA, USA., Lee J; Bionano Genomics, San Diego, CA, USA., Selvaraj S; Arima Genomics, San Diego, CA, USA., Green RE; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.; Dovetail Genomics, Santa Cruz, CA, USA., Putnam NH; Independent Researcher, Santa Cruz, CA, USA., Gut I; CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain., Ghurye J; Dovetail Genomics, Santa Cruz, CA, USA.; Department of Computer Science, University of Maryland College Park, College Park, MD, USA., Garrison E; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Sims Y; Wellcome Sanger Institute, Cambridge, UK., Collins J; Wellcome Sanger Institute, Cambridge, UK., Pelan S; Wellcome Sanger Institute, Cambridge, UK., Torrance J; Wellcome Sanger Institute, Cambridge, UK., Tracey A; Wellcome Sanger Institute, Cambridge, UK., Wood J; Wellcome Sanger Institute, Cambridge, UK., Dagnew RE; University of Southern California, Los Angeles, CA, USA., Guan D; Department of Genetics, University of Cambridge, Cambridge, UK.; School of Computer Science and Technology, Center for Bioinformatics, Harbin Institute of Technology, Harbin, China., London SE; Department of Psychology, Institute for Mind and Biology, University of Chicago, Chicago, IL, USA., Clayton DF; Department of Genetics and Biochemistry, Clemson University, Clemson, SC, USA., Mello CV; Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR, USA., Friedrich SR; Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR, USA., Lovell PV; Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR, USA., Osipova E; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.; Center for Systems Biology, Dresden, Germany.; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany., Al-Ajli FO; Monash University Malaysia Genomics Facility, School of Science, Selangor Darul Ehsan, Malaysia.; Tropical Medicine and Biology Multidisciplinary Platform, Monash University Malaysia, Selangor Darul Ehsan, Malaysia.; Qatar Falcon Genome Project, Doha, Qatar., Secomandi S; Department of Biosciences, University of Milan, Milan, Italy., Kim H; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.; eGnome, Inc., Seoul, Republic of Korea., Theofanopoulou C; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Hiller M; LOEWE Centre for Translational Biodiversity Genomics, Frankfurt, Germany.; Senckenberg Research Institute, Frankfurt, Germany.; Goethe-University, Faculty of Biosciences, Frankfurt, Germany., Zhou Y; BGI-Shenzhen, Shenzhen, China., Harris RS; Department of Biology, Pennsylvania State University, University Park, PA, USA., Makova KD; Department of Biology, Pennsylvania State University, University Park, PA, USA.; Center for Medical Genomics, Pennsylvania State University, University Park, PA, USA.; Center for Computational Biology and Bioinformatics, Pennsylvania State University, University Park, PA, USA., Medvedev P; Center for Medical Genomics, Pennsylvania State University, University Park, PA, USA.; Center for Computational Biology and Bioinformatics, Pennsylvania State University, University Park, PA, USA.; Department of Computer Science and Engineering, Pennsylvania State University, University Park, PA, USA.; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA., Hoffman J; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA., Masterson P; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA., Clark K; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA., Martin F; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Howe K; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK., Walenz BP; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Kwak W; eGnome, Inc., Seoul, Republic of Korea.; Hoonygen, Seoul, Korea., Clawson H; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Nassar L; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Paten B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA., Kraus RHS; Department of Biology, University of Konstanz, Konstanz, Germany.; Department of Migration, Max Planck Institute of Animal Behavior, Radolfzell, Germany., Crawford AJ; Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia., Gilbert MTP; Center for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.; University Museum, NTNU, Trondheim, Norway., Zhang G; China National Genebank, BGI-Shenzhen, Shenzhen, China.; Villum Center for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark.; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, China., Venkatesh B; Institute of Molecular and Cell Biology, A*STAR, Biopolis, Singapore, Singapore., Murphy RW; Centre for Biodiversity, Royal Ontario Museum, Toronto, Ontario, Canada., Koepfli KP; Smithsonian Conservation Biology Institute, Center for Species Survival, National Zoological Park, Washington, DC, USA., Shapiro B; Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Johnson WE; Smithsonian Conservation Biology Institute, Center for Species Survival, National Zoological Park, Washington, DC, USA.; The Walter Reed Biosystematics Unit, Museum Support Center MRC-534, Smithsonian Institution, Suitland, MD, USA.; Walter Reed Army Institute of Research, Silver Spring, MD, USA., Di Palma F; Department of Biological Sciences, Earlham Institute, University of East Anglia, Norwich, UK., Marques-Bonet T; Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.; Catalan Institution of Research and Advanced Studies (ICREA), Barcelona, Spain.; Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain., Teeling EC; School of Biology and Environmental Science, University College Dublin, Dublin, Ireland., Warnow T; Department of Computer Science, The University of Illinois at Urbana-Champaign, Urbana, IL, USA., Graves JM; School of Life Science, La Trobe University, Melbourne, Victoria, Australia., Ryder OA; San Diego Zoo Global, Escondido, CA, USA.; Department of Evolution, Behavior, and Ecology, University of California San Diego, La Jolla, CA, USA., Haussler D; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, USA.; Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, USA., O'Brien SJ; Laboratory of Genomics Diversity-Center for Computer Technologies, ITMO University, St. Petersburg, Russian Federation.; Guy Harvey Oceanographic Center, Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Fort Lauderdale, FL, USA., Korlach J; Pacific Biosciences, Menlo Park, CA, USA., Lewin HA; The Genome Center, University of California Davis, Davis, CA, USA.; Department of Evolution and Ecology, University of California Davis, Davis, CA, USA.; John Muir Institute for the Environment, University of California Davis, Davis, CA, USA., Howe K; Wellcome Sanger Institute, Cambridge, UK. kj2@sanger.ac.uk., Myers EW; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany. gene@mpi-cbg.de.; Center for Systems Biology, Dresden, Germany. gene@mpi-cbg.de.; Faculty of Computer Science, Technical University Dresden, Dresden, Germany. gene@mpi-cbg.de., Durbin R; Department of Genetics, University of Cambridge, Cambridge, UK. rd109@cam.ac.uk.; Wellcome Sanger Institute, Cambridge, UK. rd109@cam.ac.uk., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA. adam.phillippy@nih.gov., Jarvis ED; Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA. ejarvis@rockefeller.edu.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA. ejarvis@rockefeller.edu.; Howard Hughes Medical Institute, Chevy Chase, MD, USA. ejarvis@rockefeller.edu.

Publikováno v: Nature [Nature] 2021 Apr; Vol. 592 (7856), pp. 737-746. Date of Electronic Publication: 2021 Apr 28.