Zobrazeno 1 - 10
of 389
pro vyhledávání: '"Gary D Stormo"'
Autor:
Basab Roy, David Granas, Fredrick Bragg, Jonathan A. Y. Cher, Michael A. White, Gary D. Stormo
Publikováno v:
Communications Biology, Vol 3, Iss 1, Pp 1-9 (2020)
Here, the authors screen for feedback regulation of ribosomal proteins by overexpressing a non- regulatable version of a gene and observing its effects on the expression of the GFP-fused version. They find that 30% show at least a 3-fold reduction in
Externí odkaz:
https://doaj.org/article/0a77fcbad36d43d1b21bdd3be24384d7
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 10, Pp 3797-3810 (2020)
Genome-wide analysis of transcriptome data in Chlamydomonas reinhardtii shows periodic patterns in gene expression levels when cultures are grown under alternating light and dark cycles so that G1 of the cell cycle occurs in the light phase and S/M/G
Externí odkaz:
https://doaj.org/article/79cd84781a824ef9a056e4a4a94a53ec
Autor:
Shuxiang Ruan, Gary D. Stormo
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-8 (2018)
Abstract Background Transcription factor (TF) binding site specificity is commonly represented by some form of matrix model in which the positions in the binding site are assumed to contribute independently to the site’s activity. The independence
Externí odkaz:
https://doaj.org/article/076efbb6c85043c6b444b1916e09a6cf
Autor:
Aaron T. Spivak, Gary D. Stormo
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 6, Iss 3, Pp 653-667 (2016)
Transcriptional control of gene expression requires interactions between the cis-regulatory elements (CREs) controlling gene promoters. We developed a sensitive computational method to identify CRE combinations with conserved spacing that does not re
Externí odkaz:
https://doaj.org/article/1f853c66674f4b61a3ea8392b6578e59
Autor:
Olga Baidukova, Ian K. Blaby, Crysten E. Blaby-Haas, Michal Breker-Dekel, Rory J. Craig, Tatyana Darienko, Susan K. Dutcher, Benjamin D. Engel, Anne G. Glaesener, Ursula Goodenough, Peter Hegemann, Colleen Hui, Sunjoo Joo, Simon Kelterborn, Yusuke Kobayashi, Jae-Hyeok Lee, Xiaobo Li, Dianyi Liu, Luke C.M. Mackinder, Stephen M. Miller, Yoshiki Nishimura, Hisayoshi Nozaki, Thomas Pröschold, Stefan Schmollinger, Carolyn D. Silflow, Irina Sizova, William J. Snell, Maria J. Soto, Gary D. Stormo, Frej Tulin, James Umen, Olivier Vallon, Yulong Wang, Donald P. Weeks, Jenna Wingfield, Yuqing Yang
Publikováno v:
The Chlamydomonas Sourcebook ISBN: 9780128224571
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2ee421528be3720187e44f6543536f42
https://doi.org/10.1016/b978-0-12-822457-1.00026-1
https://doi.org/10.1016/b978-0-12-822457-1.00026-1
Autor:
Susan K. Dutcher, Gary D. Stormo
Publikováno v:
The Chlamydomonas Sourcebook ISBN: 9780128224571
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::462d605402a13d83020a5826179b729d
https://doi.org/10.1016/b978-0-12-822457-1.00014-5
https://doi.org/10.1016/b978-0-12-822457-1.00014-5
Autor:
Shuxiang Ruan, Gary D Stormo
Publikováno v:
PLoS Computational Biology, Vol 13, Iss 7, p e1005638 (2017)
The specificities of transcription factors are most commonly represented with probabilistic models. These models provide a probability for each base occurring at each position within the binding site and the positions are assumed to contribute indepe
Externí odkaz:
https://doaj.org/article/b641f07510644fa488d56903fb9e01af
Autor:
Mingxi Weng, Sik Y. Ho, Xiaoxiao Yang, Yanpu Chen, Derek Hoi Hang Ho, Ralf Jauch, Jian Yan, Hans R. Schöler, Johannes Graumann, Gary D. Stormo, Yogesh Srivastava, Anastasia Bednarz, Ya Gao, Yuanjie Wei, Sergiy Velychko, Thomas Braun, Daisylyn Senna Tan, Johnny Kim, Vikas Malik, Ligang Fan
Publikováno v:
Molecular Biology and Evolution
Transcription factor-driven cell fate engineering in pluripotency induction, transdifferentiation, and forward reprogramming requires efficiency, speed, and maturity for widespread adoption and clinical translation. Here, we used Oct4, Sox2, Klf4, an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9a59703c3bb3cce02eb205c63ea6683d
https://doi.org/10.1093/molbev/msab075
https://doi.org/10.1093/molbev/msab075
Autor:
Michael A. White, David M Granas, Basab Roy, Jonathan A. Y. Cher, Gary D. Stormo, Fredrick Bragg
Publikováno v:
Communications Biology, Vol 3, Iss 1, Pp 1-9 (2020)
Communications Biology
Communications Biology
Post-transcriptional autoregulation of gene expression is common in bacteria but many fewer examples are known in eukaryotes. We used the yeast collection of genes fused to GFP as a rapid screen for examples of feedback regulation in ribosomal protei
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e7ba52db3706ec4b74eb6a9e00e18682
https://doaj.org/article/0a77fcbad36d43d1b21bdd3be24384d7
https://doaj.org/article/0a77fcbad36d43d1b21bdd3be24384d7
Autor:
Barrett C Foat, Gary D Stormo
Publikováno v:
Molecular Systems Biology, Vol 5, Iss 1, Pp 1-14 (2009)
Abstract Gene expression is regulated at each step from chromatin remodeling through translation and degradation. Several known RNA‐binding regulatory proteins interact with specific RNA secondary structures in addition to specific nucleotides. To
Externí odkaz:
https://doaj.org/article/cf3d5abcf5c5435f8bf3a372a83d679a