Výsledky vyhledávání - "Gareth Butland"

Akademický článek

Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons

Autor: Kelly M. Wetmore, Morgan N. Price, Robert J. Waters, Jacob S. Lamson, Jennifer He, Cindi A. Hoover, Matthew J. Blow, James Bristow, Gareth Butland, Adam P. Arkin, Adam Deutschbauer

Publikováno v: mBio, Vol 6, Iss 3 (2015)

ABSTRACT Transposon mutagenesis with next-generation sequencing (TnSeq) is a powerful approach to annotate gene function in bacteria, but existing protocols for TnSeq require laborious preparation of every sample before sequencing. Thus, the existing

Externí odkaz: https://doaj.org/article/5ab332ea977f4d33bf93015b4cbda84e

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Akademický článek

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins.

Publikováno v: PLoS Biology, Vol 7, Iss 4, p e96 (2009)

One-third of the 4,225 protein-coding genes of Escherichia coli K-12 remain functionally unannotated (orphans). Many map to distant clades such as Archaea, suggesting involvement in basic prokaryotic traits, whereas others appear restricted to E. col

Externí odkaz: https://doaj.org/article/512d2be209f844b598c2040abfcbe06f

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Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough

Autor: Maxim Shatsky, Jayashree Ray, Thomas R. Juba, Grant M. Zane, Jennifer V. Kuehl, Kara B. De León, Kimberly L. Keller, Adam P. Arkin, Gareth Butland, Kelly S. Bender, Swapnil R. Chhabra, Adam M. Deutschbauer, Judy D. Wall, Valentine V. Trotter

Publikováno v: Microbiology resource announcements, vol 10, iss 11
Microbiology Resource Announcements

The dissimilatory sulfate-reducing deltaproteobacterium Desulfovibrio vulgaris Hildenborough (ATCC 29579) was chosen by the research collaboration ENIGMA to explore tools and protocols for bringing this anaerobe to model status. Here, we describe a c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f513b43a3458c8f94a6bc81a62b2e505
https://escholarship.org/uc/item/4zk7904n

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Large-scale Genetic Characterization of a Model Sulfate-Reducing Bacterium

Autor: Rida Ali, Kelly M. Wetmore, Erica L.-W. Majumder, Thomas R. Juba, Judy D. Wall, John-Marc Chandonia, Maxim Shatsky, Valentine V. Trotter, Qin Gui, Gareth Butland, Grant M. Zane, Adam P. Arkin, Adam M. Deutschbauer, Jennifer V. Kuehl, Morgan N. Price, Kara B. De León

Author(s): Trotter, Valentine V; Shatsky, Maxim; Price, Morgan N; Juba, Thomas R; Zane, Grant M; De Leon, Kara B; Majumder, Erica L; Gui, Qin; Ali, Rida; Wetmore, Kelly M; Kuehl, Jennifer V; Arkin, Adam P; Wall, Judy D; Deutschbauer, Adam M; Chandoni

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::82c063b7231944dabad7aa83b2583d21
https://doi.org/10.1101/2021.01.13.426591

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Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions

Autor: Mark D. Biggin, Jian Jin, Terry C. Hazen, Ming Dong, H. Ewa Witkowska, Steven E. Brenner, Haichuan Liu, Steven C. Hall, Megan Choi, Gareth Butland, Lee Lisheng Yang, Mary E. Singer, Maxim Shatsky, Susan J. Fisher, Jil T. Geller, John-Marc Chandonia

Publikováno v: Molecular & Cellular Proteomics : MCP
Shatsky, M; Dong, M; Liu, H; Yang, LL; Choi, M; Singer, ME; et al.(2016). Quantitative tagless copurification: A method to validate and identify protein-protein interactions. Molecular and Cellular Proteomics, 15(6), 2186-2202. doi: 10.1074/mcp.M115.057117. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/9nb0r5zh
Molecular & cellular proteomics : MCP, vol 15, iss 6

© 2016 by The American Society for Biochemistry and Molecular Biology, Inc. Identifying protein-protein interactions (PPIs) at an acceptable false discovery rate (FDR) is challenging. Previously we identified several hundred PPIs from affinity purif

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b8406f38a984679edf048db1dc594f10
https://doi.org/10.1074/mcp.m115.057117

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Independence of Nitrate and Nitrite Inhibition of Desulfovibrio vulgaris Hildenborough and Use of Nitrite as a Substrate for Growth

Autor: Hannah L. Korte, Avneesh Saini, Valentine V. Trotter, Judy D. Wall, Gareth Butland, Adam P. Arkin

Publikováno v: Environmental science & technology, vol 49, iss 2

Sulfate-reducing microbes, such as Desulfovibrio vulgaris Hildenborough, cause “souring” of petroleum reservoirs through produced sulfide and precipitate heavy metals, either as sulfides or by alteration of the metal reduction state. Thus, inhibi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aacf2fa3d7bcae0f771321fce2e43eb2
https://doi.org/10.1021/es504484m

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Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough

Autor: Gareth Butland, Kara B. De León, Judy D. Wall, Grant M. Zane, Valentine V. Trotter, Matthew W. Fields, Gregory P. Krantz, Peter J. Walian, Adam P. Arkin

Publikováno v: mBio, Vol 8, Iss 5, p e01696-17 (2017)
mBio, Vol 8, Iss 5 (2017)

Biofilms of sulfate-reducing bacteria (SRB) are of particular interest as members of this group are culprits in corrosion of industrial metal and concrete pipelines as well as being key players in subsurface metal cycling. Yet the mechanism of biofil

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::11de7416dfc9969919d43346f875c646
http://mbio.asm.org/cgi/content/full/8/5/e01696-17

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Physical and Functional Interactions of a Monothiol Glutaredoxin and an Iron Sulfur Cluster Carrier Protein with the Sulfur-donating Radical S-Adenosyl-l-methionine Enzyme MiaB

Autor: Gareth Butland, Sylvain Boutigny, Edward E. K. Baidoo, Jay D. Keasling, Avneesh Saini, Natasha Yeung

Publikováno v: Journal of Biological Chemistry. 288:14200-14211

The biosynthesis of iron sulfur (FeS) clusters, their trafficking from initial assembly on scaffold proteins via carrier proteins to final incorporation into FeS apoproteins, is a highly coordinated process enabled by multiprotein systems encoded in

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f9394a10b8aaea74c2c8dbb9b2e43266
https://doi.org/10.1074/jbc.m113.460360

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Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported

Publikováno v: Molecular & cellular proteomics : MCP, vol 15, iss 5
Shatsky, M; Allen, S; Gold, BL; Liu, NL; Juba, TR; Reveco, SA; et al.(2016). Bacterial interactomes: Interacting protein partners share similar function and are validated in independent assays more frequently than previously reported. Molecular and Cellular Proteomics, 15(5), 1539-1555. doi: 10.1074/mcp.M115.054692. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/3z82f5ct

© 2016 by The American Society for Biochemistry and Molecular Biology, Inc. Numerous affinity purification-mass spectrometry (APMS) and yeast two-hybrid screens have each defined thousands of pairwise protein-protein interactions (PPIs), most of whi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2884c2d910450fa99574dd0804be24a
https://escholarship.org/uc/item/3z82f5ct

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