Cactus: A user-friendly and reproducible ATAC-Seq and mRNA-Seq analysis pipeline for data preprocessing, differential analysis, and enrichment analysis

Autor: Salignon, Jérôme, Millan-Ariño, Lluís, Garcia, Maxime U., Riedel, Christian G.

Publikováno v: In Genomics July 2024 116(4)

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Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager.

Autor: Fellows Yates JA; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, Germany.; Institut für Vor- und Frühgeschichtliche Archäologie und Provinzialrömische Archäologie, Ludwig-Maximilians-Universität München, Münich, Germany., Lamnidis TC; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, Germany., Borry M; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, Germany., Andrades Valtueña A; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, Germany., Fagernäs Z; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, Germany., Clayton S; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, Germany., Garcia MU; National Genomics Infrastructure, Science for Life Laboratory, Stockholm, Sweden.; Barntumörbanken, Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden., Neukamm J; Institute of Evolutionary Medicine, University of Zurich, Zurich, Switzerland.; Institute for Bioinformatics and Medical Informatics, Eberhard-Karls University Tübingen, Tübingen, Germany., Peltzer A; Department of Archaeogenetics, Max Planck Institute for the Science of Human History, Jena, Germany.; Quantitative Biology Center, Eberhard-Karls University Tübingen, Tübingen, Germany.

Publikováno v: PeerJ [PeerJ] 2021 Mar 16; Vol. 9, pp. e10947. Date of Electronic Publication: 2021 Mar 16 (Print Publication: 2021).