The relationship between nanoscale genome organization and gene expression in mouse embryonic stem cells during pluripotency transition.

Autor: Garate X; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain., Gómez-García PA; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain., Merino MF; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain., Angles MC; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain., Zhu C; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain., Castells-García A; Medical Research Institute, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, 106 Zhongshan Er Road, Yuexiu district, 510080 Guangzhou, China., Ed-Daoui I; Medical Research Institute, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, 106 Zhongshan Er Road, Yuexiu district, 510080 Guangzhou, China., Martin L; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain., Ochiai H; Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, 739-0046, Japan., Neguembor MV; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain., Cosma MP; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain.; Medical Research Institute, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, 106 Zhongshan Er Road, Yuexiu district, 510080 Guangzhou, China.; ICREA, Pg. Lluis Companys 23, Barcelona 08010, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2024 Aug 12; Vol. 52 (14), pp. 8146-8164.

MiOS, an integrated imaging and computational strategy to model gene folding with nucleosome resolution.

Autor: Neguembor MV; Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain. victoire.neguembor@crg.eu., Arcon JP; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain., Buitrago D; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain.; Departamento de Física y Matemáticas, Universidad Autónoma de Manizales, Manizales, Colombia., Lema R; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain., Walther J; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain., Garate X; Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain., Martin L; Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain., Romero P; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain., AlHaj Abed J; Department of Genetics, Harvard Medical School, Boston, MA, USA., Gut M; CNAG-CRG, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain., Blanc J; CNAG-CRG, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain., Lakadamyali M; Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA., Wu CT; Department of Genetics, Harvard Medical School, Boston, MA, USA., Brun Heath I; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain., Orozco M; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain. modesto.orozco@irbbarcelona.org.; Faculty of Biology, University of Barcelona, Barcelona, Spain. modesto.orozco@irbbarcelona.org.; ICREA, Barcelona, Spain. modesto.orozco@irbbarcelona.org., Dans PD; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain. pablo.dans@unorte.edu.uy.; Department of Biological Sciences, CENUR Litoral Norte, Universidad de la República (UdelaR), Salto, Uruguay. pablo.dans@unorte.edu.uy.; Bioinformatics Unit, Institut Pasteur de Montevideo, Montevideo, Uruguay. pablo.dans@unorte.edu.uy., Cosma MP; Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain. pia.cosma@crg.eu.; Universitat Pompeu Fabra (UPF), Barcelona, Spain. pia.cosma@crg.eu.; ICREA, Barcelona, Spain. pia.cosma@crg.eu.; CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. pia.cosma@crg.eu.

Publikováno v: Nature structural & molecular biology [Nat Struct Mol Biol] 2022 Oct; Vol. 29 (10), pp. 1011-1023. Date of Electronic Publication: 2022 Oct 11.

Polymer Physics Models Reveal Structural Folding Features of Single-Molecule Gene Chromatin Conformations.

Autor: Conte, Mattia¹ (AUTHOR) mattia.conte@na.infn.it, Abraham, Alex¹ (AUTHOR), Esposito, Andrea¹ (AUTHOR), Yang, Liyan² (AUTHOR), Gibcus, Johan H.² (AUTHOR), Parsi, Krishna M.³ (AUTHOR), Vercellone, Francesca^4,5 (AUTHOR), Fontana, Andrea¹ (AUTHOR), Di Pierno, Florinda^4,5 (AUTHOR), Dekker, Job^2,6 (AUTHOR), Nicodemi, Mario¹ (AUTHOR) mattia.conte@na.infn.it

Publikováno v: International Journal of Molecular Sciences. Sep2024, Vol. 25 Issue 18, p10215. 16p.

Integrin alpha-5 subunit is critical for the early stages of human pluripotent stem cell cardiac differentiation.

Autor: Neiman G; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Scarafía MA; LIAN-CONICET, FLENI, Buenos Aires, Argentina., La Greca A; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Santín Velazque NL; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Garate X; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Waisman A; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Möbbs AM; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Kasai-Brunswick TH; Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil., Mesquita F; Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil., Martire-Greco D; Academia Nacional de Medicina, Buenos Aires, Argentina., Moro LN; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Luzzani C; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Bastos Carvalho A; Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil., Sevlever GE; LIAN-CONICET, FLENI, Buenos Aires, Argentina., Campos de Carvalho A; Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil., Guberman AS; Laboratorio de Regulación Génica en Células Madre, Departamento de Química Biológica y Departamento de Fisiología y Biología Molecular y Celular, Facultad de Ciencias Exactas y Naturales, UBA, Buenos Aires, Argentina., Miriuka SG; LIAN-CONICET, FLENI, Buenos Aires, Argentina. smiriuka@fleni.org.ar.; Consejo Nacional sobre Investgaciones Científicas y Técnias (CONICET), Buenos Aires, Argentina. smiriuka@fleni.org.ar.

Publikováno v: Scientific reports [Sci Rep] 2019 Dec 02; Vol. 9 (1), pp. 18077. Date of Electronic Publication: 2019 Dec 02.

Modulation of Ceramide-Induced Apoptosis in Enteric Neurons by Aryl Hydrocarbon Receptor Signaling: Unveiling a New Pathway beyond ER Stress.

Autor: Anitha, Mallappa¹ (AUTHOR) azv2@psu.edu, Kumar, Supriya M.¹ (AUTHOR) iuk41@psu.edu, Koo, Imhoi¹ (AUTHOR) ghp2@psu.edu, Perdew, Gary H.¹ (AUTHOR), Srinivasan, Shanthi^2,3 (AUTHOR) ssrini2@emory.edu, Patterson, Andrew D.¹ (AUTHOR) adp117@psu.edu

Publikováno v: International Journal of Molecular Sciences. Aug2024, Vol. 25 Issue 16, p8581. 25p.