Native Circular RNA Pulldown Method to Simultaneously Profile RNA and Protein Interactions.

Autor: Gabryelska MM; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia., Webb ST; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia., Lin H; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia., Gantley L; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia., Kirk K; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia., Liu R; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia., Stringer BW; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia., Conn VM; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia., Conn SJ; Flinders Health and Medical Research Institute (FHMRI), College of Medicine and Public Health, Flinders University, Adelaide, SA, Australia. simon.conn@flinders.edu.au.

Publikováno v: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2024; Vol. 2765, pp. 299-309.

Global mapping of RNA homodimers in living cells.

Autor: Gabryelska MM; MRC Human Genetics Unit, University of Edinburgh, Edinburgh, EH4 2XU, United Kingdom.; Flinders Health and Medical Research Institute, College of Medicine and Public Health, Flinders University, Bedford Park, South Australia 5042, Australia., Badrock AP; Centre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, United Kingdom., Lau JY; MRC Human Genetics Unit, University of Edinburgh, Edinburgh, EH4 2XU, United Kingdom., O'Keefe RT; Division of Evolution and Genomic Sciences, Faculty of Biology, Medicine and Health, School of Biological Sciences, University of Manchester, Manchester, M13 9PL, United Kingdom., Crow YJ; Centre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, United Kingdom., Kudla G; MRC Human Genetics Unit, University of Edinburgh, Edinburgh, EH4 2XU, United Kingdom.

Publikováno v: Genome research [Genome Res] 2022 May; Vol. 32 (5), pp. 956-967. Date of Electronic Publication: 2022 Mar 24.

COMRADES determines in vivo RNA structures and interactions.

Autor: Ziv O; Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Cambridge, UK. omer.ziv@gurdon.cam.ac.uk.; Department of Genetics, University of Cambridge, Cambridge, UK. omer.ziv@gurdon.cam.ac.uk., Gabryelska MM; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, Scotland, UK., Lun ATL; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK., Gebert LFR; Department of Integrative Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA., Sheu-Gruttadauria J; Department of Integrative Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA., Meredith LW; Department of Pathology, University of Cambridge, Cambridge, UK., Liu ZY; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China.; School of Medicine (Shenzhen), Sun Yat-sen University, Guangzhou, China., Kwok CK; Department of Chemistry, City University of Hong Kong, Hong Kong, China., Qin CF; State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China., MacRae IJ; Department of Integrative Structural and Computational Biology, the Scripps Research Institute, La Jolla, CA, USA., Goodfellow I; Department of Pathology, University of Cambridge, Cambridge, UK., Marioni JC; Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.; Wellcome Sanger Institute, Cambridge, UK., Kudla G; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, Scotland, UK. gkudla@gmail.com., Miska EA; Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Cambridge, UK. eric.miska@gurdon.cam.ac.uk.; Department of Genetics, University of Cambridge, Cambridge, UK. eric.miska@gurdon.cam.ac.uk.; Wellcome Sanger Institute, Cambridge, UK. eric.miska@gurdon.cam.ac.uk.

Publikováno v: Nature methods [Nat Methods] 2018 Oct; Vol. 15 (10), pp. 785-788. Date of Electronic Publication: 2018 Sep 10.

Machine learning modeling of RNA structures: methods, challenges and future perspectives.

Autor: Wu, Kevin E^1,2,3 (AUTHOR), Zou, James Y^1,3 (AUTHOR) jamesz@stanford.edu, Chang, Howard^3,4 (AUTHOR) jamesz@stanford.edu

Publikováno v: Briefings in Bioinformatics. Jul2023, Vol. 24 Issue 4, p1-12. 12p.

[The world of double helix--"it did not escape our notice"].

Autor: Gabryelska MM; Institute of Bioorganic Chemistry, Polish Academy of Sciences, 12/14 Z. Noskowskiego St., 61-704 Poznań, Poland., Barciszewski J; Institute of Bioorganic Chemistry, Polish Academy of Sciences, 12/14 Z. Noskowskiego St., 61-704 Poznań, Poland.

Publikováno v: Postepy biochemii [Postepy Biochem] 2013; Vol. 59 (3), pp. 246-56.