Zobrazeno 1 - 10
of 64
pro vyhledávání: '"Gaëlle Lelandais"'
Publikováno v:
BMC Genomics, Vol 23, Iss 1, Pp 1-19 (2022)
Abstract Background Publicly available RNA-seq datasets are often underused although being helpful to improve functional annotation of eukaryotic genomes. This is especially true for filamentous fungi genomes which structure differs from most well an
Externí odkaz:
https://doaj.org/article/9291cd62eb6f48bebe88b4a38b2ca637
Publikováno v:
BMC Research Notes, Vol 15, Iss 1, Pp 1-6 (2022)
Abstract Objectives Transcriptional regulatory modules are usually modelled via a network, in which nodes correspond to genes and edges correspond to regulatory associations between them. In the model yeast Saccharomyces cerevisiae, the topological p
Externí odkaz:
https://doaj.org/article/ebbec3a879a941459c29a4a6de9c1a71
Autor:
Thomas Denecker, Gaëlle Lelandais
Publikováno v:
BMC Research Notes, Vol 11, Iss 1, Pp 1-7 (2018)
Abstract Objective bPeaks is a peak calling program to detect protein DNA-binding sites from ChIPseq data in small eukaryotic genomes. The simplicity of the bPeaks method is well appreciated by users, but its use via an R package is challenging and t
Externí odkaz:
https://doaj.org/article/955a1a0a5a2d4744b7cad32e5f3f672c
Autor:
Gaëlle Lelandais, Thomas Denecker, Camille Garcia, Nicolas Danila, Thibaut Léger, Jean-Michel Camadro
Publikováno v:
BMC Research Notes, Vol 12, Iss 1, Pp 1-3 (2019)
Abstract Objective Label-free quantitative proteomics has emerged as a powerful strategy to obtain high quality quantitative measures of the proteome with only a very small quantity of total protein extract. Because our research projects were requiri
Externí odkaz:
https://doaj.org/article/594ad0e68b3144e4be2c99c38f41e3de
Autor:
Antonin Thiébaut, Thierry Delaveau, Médine Benchouaia, Julia Boeri, Mathilde Garcia, Gaëlle Lelandais, Frédéric Devaux
Publikováno v:
Scientific Reports, Vol 7, Iss 1, Pp 1-10 (2017)
Abstract The CCAAT-binding complex (CBC) is a heterotrimeric transcription factor which is widely conserved in eukaryotes. In the model yeast S. cerevisiae, CBC positively controls the expression of respiratory pathway genes. This role involves inter
Externí odkaz:
https://doaj.org/article/e89e53f32293430fa3659c0cd66b831d
Autor:
Thomas Denecker, William Durand, Julien Maupetit, Charles Hébert, Jean-Michel Camadro, Pierre Poulain, Gaëlle Lelandais
Publikováno v:
PeerJ, Vol 7, p e6623 (2019)
Background In biology, high-throughput experimental technologies, also referred as “omics” technologies, are increasingly used in research laboratories. Several thousands of gene expression measurements can be obtained in a single experiment. Res
Externí odkaz:
https://doaj.org/article/66844b202c874d959422e4e964e73713
Autor:
Médine Benchouaia, Hugues Ripoche, Mariam Sissoko, Antonin Thiébaut, Jawad Merhej, Thierry Delaveau, Laure Fasseu, Sabrina Benaissa, Geneviève Lorieux, Laurent Jourdren, Stéphane Le Crom, Gaëlle Lelandais, Eduardo Corel, Frédéric Devaux
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
In this work, we used comparative transcriptomics to identify regulatory outliers (ROs) in the human pathogen Candida glabrata. ROs are genes that have very different expression patterns compared to their orthologs in other species. From comparative
Externí odkaz:
https://doaj.org/article/7c7a9e78ea904be493a13f5dd0d235e7
Autor:
Nika Abdollahi, Alexandre Albani, Eric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphael Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes
Publikováno v:
PLoS Computational Biology, Vol 14, Iss 3, p e1005992 (2018)
We present a new educational initiative called Meet-U that aims to train students for collaborative work in computational biology and to bridge the gap between education and research. Meet-U mimics the setup of collaborative research projects and tak
Externí odkaz:
https://doaj.org/article/e780d76873364d1588f1c361ea6d3e72
Autor:
Nicolas Morin, Julien Cescut, Athanasios Beopoulos, Gaëlle Lelandais, Veronique Le Berre, Jean-Louis Uribelarrea, Carole Molina-Jouve, Jean-Marc Nicaud
Publikováno v:
PLoS ONE, Vol 6, Iss 11, p e27966 (2011)
We previously developed a fermentation protocol for lipid accumulation in the oleaginous yeast Y. lipolytica. This process was used to perform transcriptomic time-course analyses to explore gene expression in Y. lipolytica during the transition from
Externí odkaz:
https://doaj.org/article/9f3561994b6a4999a4fe6748f2c2ebfa
Publikováno v:
PLoS ONE, Vol 6, Iss 6, p e20924 (2011)
AP-1 proteins are transcription factors (TFs) that belong to the basic leucine zipper family, one of the largest families of TFs in eukaryotic cells. Despite high homology between their DNA binding domains, these proteins are able to recognize divers
Externí odkaz:
https://doaj.org/article/10bff64a8f8145de98fd3ce9da525686