Zobrazeno 1 - 10
of 64
pro vyhledávání: '"G. Calixto"'
Autor:
Runxuan Zhang, Richard Kuo, Max Coulter, Cristiane P. G. Calixto, Juan Carlos Entizne, Wenbin Guo, Yamile Marquez, Linda Milne, Stefan Riegler, Akihiro Matsui, Maho Tanaka, Sarah Harvey, Yubang Gao, Theresa Wießner-Kroh, Alejandro Paniagua, Martin Crespi, Katherine Denby, Asa ben Hur, Enamul Huq, Michael Jantsch, Artur Jarmolowski, Tino Koester, Sascha Laubinger, Qingshun Quinn Li, Lianfeng Gu, Motoaki Seki, Dorothee Staiger, Ramanjulu Sunkar, Zofia Szweykowska-Kulinska, Shih-Long Tu, Andreas Wachter, Robbie Waugh, Liming Xiong, Xiao-Ning Zhang, Ana Conesa, Anireddy S. N. Reddy, Andrea Barta, Maria Kalyna, John W. S. Brown
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-37 (2022)
Abstract Background Accurate and comprehensive annotation of transcript sequences is essential for transcript quantification and differential gene and transcript expression analysis. Single-molecule long-read sequencing technologies provide improved
Externí odkaz:
https://doaj.org/article/a753e2cdc48c4e7cbc7f127b69335e29
Autor:
Luíza L. B. Dantas, Cristiane P. G. Calixto, Maira M. Dourado, Monalisa S. Carneiro, John W. S. Brown, Carlos T. Hotta
Publikováno v:
Frontiers in Plant Science, Vol 10 (2019)
Alternative Splicing (AS) is a mechanism that generates different mature transcripts from precursor mRNAs (pre-mRNAs) of the same gene. In plants, a wide range of physiological and metabolic events are related to AS, as well as fast responses to chan
Externí odkaz:
https://doaj.org/article/5d9762c1c81949d487cac6a9b1408401
Autor:
Cristiane P. G. Calixto, Nikoleta A. Tzioutziou, Allan B. James, Csaba Hornyik, Wenbin Guo, Runxuan Zhang, Hugh G. Nimmo, John W. S. Brown
Publikováno v:
Frontiers in Plant Science, Vol 10 (2019)
Plants re-program their gene expression when responding to changing environmental conditions. Besides differential gene expression, extensive alternative splicing (AS) of pre-mRNAs and changes in expression of long non-coding RNAs (lncRNAs) are assoc
Externí odkaz:
https://doaj.org/article/16bf940a18144f86a5c5cab34eec7d8e
Autor:
Erickson Basave Villalobos, Sergio Rosales Mata, José Á. Sigala Rodríguez, Celi G. Calixto Valencia, Homero Sarmiento López
Publikováno v:
Revista Mexicana de Ciencias Forestales, Vol 8, Iss 44 (2017)
Para determinar si el manejo de condiciones de luz en vivero tiene potencial para manipular características morfo-fisiológicas de calidad de planta, en este estudio se cuantificaron los cambios de plántulas de Prosopis laevigata sometidas a con
Externí odkaz:
https://doaj.org/article/a237855925454319bab20673bc07e6dd
Publikováno v:
PLoS ONE, Vol 11, Iss 12, p e0168028 (2016)
Alternative splicing (AS) is a regulated mechanism that generates multiple transcripts from individual genes. It is widespread in eukaryotic genomes and provides an effective way to control gene expression. At low temperatures, AS regulates Arabidops
Externí odkaz:
https://doaj.org/article/28fb9b15d0d74bc29700517e4761f89d
Autor:
Allan James, Runxuan Zhang, John W. S. Brown, Nikoleta A. Tzioutziou, Hugh G. Nimmo, Cristiane P. G. Calixto, Wenbin Guo
Publikováno v:
Methods in Molecular Biology ISBN: 9781071619117
RNA-sequencing (RNA-seq) is currently the method of choice for analysis of differential gene expression. To fully exploit the wealth of data generated from genome-wide transcriptomic approaches, the initial design of the experiment is of paramount im
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9433215cc57dc0bd80d096bfb4a79a91
https://doi.org/10.1007/978-1-0716-1912-4_14
https://doi.org/10.1007/978-1-0716-1912-4_14
Autor:
Nikoleta A, Tzioutziou, Allan B, James, Wenbin, Guo, Cristiane P G, Calixto, Runxuan, Zhang, Hugh G, Nimmo, John W S, Brown
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2398
RNA-sequencing (RNA-seq) is currently the method of choice for analysis of differential gene expression. To fully exploit the wealth of data generated from genome-wide transcriptomic approaches, the initial design of the experiment is of paramount im
Autor:
Ping Lin, Robbie Waugh, John W. S. Brown, Runxuan Zhang, Nikoleta A. Tzioutziou, Wenbin Guo, Cristiane P. G. Calixto
Publikováno v:
BMC Systems Biology, Vol 11, Iss 1, Pp 1-12 (2017)
BMC Systems Biology
BMC Systems Biology
Background Co-expression has been widely used to identify novel regulatory relationships using high throughput measurements, such as microarray and RNA-seq data. Evaluation studies on co-expression network analysis methods mostly focus on networks of
Autor:
Robbie Waugh, Wenbin Guo, Gordon Stephen, Cristiane P. G. Calixto, Nikoleta A. Tzioutziou, Iain Milne, Runxuan Zhang, John W. S. Brown
Publikováno v:
RNA Biology
article-version (VoR) Version of Record
article-version (VoR) Version of Record
RNA-sequencing (RNA-seq) analysis of gene expression and alternative splicing should be routine and robust but is often a bottleneck for biologists because of different and complex analysis programs and reliance on specialized bioinformatics skills.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::933a758d959f7aac2904c2a4863e024a
Autor:
Runxuan Zhang, Gordon Stephen, Cristiane P. G. Calixto, Iain Milne, Nikoleta A. Tzioutziou, John W. S. Brown, Robbie Waugh, Wenbin Guo
RNA-sequencing (RNA-seq) analysis of gene expression and alternative splicing should be routine and robust but is often a bottleneck for biologists because of different and complex analysis programs and reliance on skilled bioinformaticians to perfor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4e5a7317ddd22613255b4a27c49c290d
https://doi.org/10.1101/656686
https://doi.org/10.1101/656686