Loss of cytochrome P450 (CYP)1B1 mitigates hyperoxia response in adult mouse lung by reprogramming metabolism and translation

Autor: Grimm, Sandra L., Stading, Rachel E., Robertson, Matthew J., Gandhi, Tanmay, Fu, Chenlian, Jiang, Weiwu, Xia, Guobin, Lingappan, Krithika, Coarfa, Cristian, Moorthy, Bhagavatula

Publikováno v: In Redox Biology August 2023 64

Automated real-world data integration improves cancer outcome prediction

Autor: Jee, Justin, Fong, Christopher, Pichotta, Karl, Tran, Thinh Ngoc, Luthra, Anisha, Waters, Michele, Fu, Chenlian, Altoe, Mirella, Liu, Si-Yang, Maron, Steven B., Ahmed, Mehnaj, Kim, Susie, Pirun, Mono, Chatila, Walid K., de Bruijn, Ino, Pasha, Arfath, Kundra, Ritika, Gross, Benjamin, Mastrogiacomo, Brooke, Aprati, Tyler J., Liu, David, Gao, JianJiong, Capelletti, Marzia, Pekala, Kelly, Loudon, Lisa, Perry, Maria, Bandlamudi, Chaitanya, Donoghue, Mark, Satravada, Baby Anusha, Martin, Axel, Shen, Ronglai, Chen, Yuan, Brannon, A. Rose, Chang, Jason, Braunstein, Lior, Li, Anyi, Safonov, Anton, Stonestrom, Aaron, Sanchez-Vela, Pablo, Wilhelm, Clare, Robson, Mark, Scher, Howard, Ladanyi, Marc, Reis-Filho, Jorge S., Solit, David B., Jones, David R., Gomez, Daniel, Yu, Helena, Chakravarty, Debyani, Yaeger, Rona, Abida, Wassim, Park, Wungki, O’Reilly, Eileen M., Garcia-Aguilar, Julio, Socci, Nicholas, Sanchez-Vega, Francisco, Carrot-Zhang, Jian, Stetson, Peter D., Levine, Ross, Rudin, Charles M., Berger, Michael F., Shah, Sohrab P., Schrag, Deborah, Razavi, Pedram, Kehl, Kenneth L., Li, Bob T., Riely, Gregory J., Schultz, Nikolaus

Publikováno v: Nature; 20240101, Issue: Preprints p1-9, 9p

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CAMP: A modular metagenomics analysis system for integrated multi-step data exploration.

Autor: Mak L; Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine of Cornell University, NY, USA.; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA., Tierney B; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medicine of Cornell University, NY, USA., Ronkowski C; Titus Family Department of Clinical Pharmacy, University of Southern California, CA, USA.; Department of Quantitative and Computational Biology, University of Southern California, CA, USA., Toscan RB; Małopolska Centre of Biotechnology, Jagiellonian University, Kraków, Poland., Turhan B; Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine of Cornell University, NY, USA.; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA., Toomey M; Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine of Cornell University, NY, USA.; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA., Martinez JSA; Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine of Cornell University, NY, USA.; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA., Fu C; Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine of Cornell University, NY, USA.; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA., Lucaci AG; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medicine of Cornell University, NY, USA., Solano AHB; Department of Biochemistry, Institute of Chemistry, Universidade de São Paulo, São Paulo, Brazil., Setubal JC; Department of Biochemistry, Institute of Chemistry, Universidade de São Paulo, São Paulo, Brazil., Henriksen JR; Natural Resource Ecology Laboratory, Colorado State University, CO, USA.; Two Frontiers Project, State, Country., Zimmerman S; Broad Institute of MIT and Harvard, MA, USA, Mathematics Institute, University of Warwick, Coventry, UK., Kopbayeva M; Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine of Cornell University, NY, USA.; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medicine of Cornell University, NY, USA.; Titus Family Department of Clinical Pharmacy, University of Southern California, CA, USA.; Department of Quantitative and Computational Biology, University of Southern California, CA, USA.; Małopolska Centre of Biotechnology, Jagiellonian University, Kraków, Poland.; Department of Biochemistry, Institute of Chemistry, Universidade de São Paulo, São Paulo, Brazil.; Natural Resource Ecology Laboratory, Colorado State University, CO, USA.; Two Frontiers Project, State, Country.; Broad Institute of MIT and Harvard, MA, USA, Mathematics Institute, University of Warwick, Coventry, UK.; Nazarbayev Intellectual School of Physics and Math, Almaty, Kazakhstan.; School of Molecular and Theoretical Biology, Tartu, Estonia.; Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine.; Kyiv Academic University, Kyiv, Ukraine.; Taras Shevchenko National University, Kyiv, Ukraine.; ETH, Zurich, Switzerland.; Biotia, NY, USA.; GeoSeeq Foundation, NY, USA.; Department of Biology, Lund University, Sweden.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine of Cornell University, NY, USA, The Feil Family Brain and Mind Research Institute, Weill Cornell Medicine of Cornell University, NY, USA.; Englander Institute for Precision Medicine, Weill Cornell Medicine of Cornell University, NY, USA., Noyvert A; Nazarbayev Intellectual School of Physics and Math, Almaty, Kazakhstan., Iwan Z; School of Molecular and Theoretical Biology, Tartu, Estonia., Kar S; School of Molecular and Theoretical Biology, Tartu, Estonia., Nakazawa N; School of Molecular and Theoretical Biology, Tartu, Estonia., Meleshko D; Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine of Cornell University, NY, USA.; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA., Horyslavets D; Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine.; Kyiv Academic University, Kyiv, Ukraine., Kantsypa V; Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine.; Taras Shevchenko National University, Kyiv, Ukraine., Frolova A; Institute of Molecular Biology and Genetics, NASU, Kyiv, Ukraine.; Kyiv Academic University, Kyiv, Ukraine., Kahles A; ETH, Zurich, Switzerland., Danko D; Biotia, NY, USA.; GeoSeeq Foundation, NY, USA., Elhaik E; Department of Biology, Lund University, Sweden., Labaj P; Małopolska Centre of Biotechnology, Jagiellonian University, Kraków, Poland., Mangul S; Titus Family Department of Clinical Pharmacy, University of Southern California, CA, USA.; Department of Quantitative and Computational Biology, University of Southern California, CA, USA., Mason CE; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medicine of Cornell University, NY, USA.; ETH, Zurich, Switzerland.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine of Cornell University, NY, USA, The Feil Family Brain and Mind Research Institute, Weill Cornell Medicine of Cornell University, NY, USA., Hajirasouliha I; Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medicine of Cornell University, NY, USA.; Englander Institute for Precision Medicine, Weill Cornell Medicine of Cornell University, NY, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Sep 14. Date of Electronic Publication: 2024 Sep 14.