Additional file 4: Table S3. of Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

Autor: Kamke, Janine, Kittelmann, Sandra, Soni, Priya, Li, Yang, Tavendale, Michael, Ganesh, Siva, Janssen, Peter, Weibing Shi, Froula, Jeff, Rubin, Edward, Attwood, Graeme

Gene set enrichment analysis of metagenome and metatranscriptome datasets. Pathways with genes differentially present or expressed based on nominal P value (NOM P val â ¤0.05) are shown, ranked by normalised enrichment score (NES). Corrected P valu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56ede99df252f2eb0cee9285d6ba7b6d

Additional file 5:Â Text S1. of Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

Autor: Kamke, Janine, Kittelmann, Sandra, Soni, Priya, Li, Yang, Tavendale, Michael, Ganesh, Siva, Janssen, Peter, Weibing Shi, Froula, Jeff, Rubin, Edward, Attwood, Graeme

Detailed results for the statistical analysis and additional methods. (DOCX 40 kb)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1118568bf13f7d7cd484beb9407f838a

Additional file 7: Table S4. of Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

Autor: Kamke, Janine, Kittelmann, Sandra, Soni, Priya, Li, Yang, Tavendale, Michael, Ganesh, Siva, Janssen, Peter, Weibing Shi, Froula, Jeff, Rubin, Edward, Attwood, Graeme

Statistical data of KEGG genes related to low or high methane yield animals for Wilcoxon rank sum test (WRS) and sparse partial least squares analysis (sPLS). (PDF 1543Â kb)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::339744da3ba89c03c7b892bcd827d49c

Dynamics of Sequence -Discrete Bacterial Populations Inferred Using Metagenomes

Autor: Stevens, Sarah, Bendall, Matthew, Kang, Dongwan, Froula, Jeff, Egan, Rob, Chan, Leong-Keat, Tringe, Susannah, McMahon, Katherine, Malmstrom, Rex

Publikováno v: Stevens, Sarah; Bendall, Matthew; Kang, Dongwan; Froula, Jeff; Egan, Rob; Chan, Leong-Keat; et al.(2014). Dynamics of Sequence-Discrete Bacterial Populations Inferred Using Metagenomes. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/9d2380nf

From a multi-year metagenomic time series of two dissimilar Wisconsin lakes we have assembled dozens of genomes using a novel approach that bins contigs into distinct genome based on sequence composition, e.g. kmer frequencies, and contig coverage pa

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::3b668046c00abf1cc34afe79f88dc709
http://www.escholarship.org/uc/item/9d2380nf

MetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequence

Autor: Kang, Dongwan, Froula, Jeff, Egan, Rob, Wang, Zhong

Publikováno v: Kang, Dongwan; Froula, Jeff; Egan, Rob; & Wang, Zhong. (2014). MetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequence. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/1wz6h4fc

Grouping large fragments assembled from shotgun metagenomic sequences to deconvolute complex microbial communities, or metagenome binning, enables the study of individual organisms and their interactions. Here we developed automated metagenome binnin

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::d14ecddba01011a7760fd4b7c1fbeb24
http://www.escholarship.org/uc/item/1wz6h4fc