Zobrazeno 1 - 10
of 218
pro vyhledávání: '"Fromion, Vincent"'
Motivated by a general principle governing regulation mechanisms in biological cells, we investigate a general interaction scheme between different populations of particles and specific particles, referred to as agents. Assuming that each particle fo
Externí odkaz:
http://arxiv.org/abs/2310.04833
In this paper we study an important global regulation mechanism of transcription of biological cells using specific macro-molecules, 6S RNAs. The functional property of 6S RNAs is of blocking the transcription of RNAs when the environment of the cell
Externí odkaz:
http://arxiv.org/abs/2208.09291
Publikováno v:
SIAM Journal on Applied Dynamical Systems (2023)
We study the qualitative behavior of a model to represent local regulation in a metabolic network. The model is based on the end-product control structure introduced in [A. Goelzer, F. Bekkal Brikci, I. Martin-Verstraete et al., BMC Syst Biol 2 (2008
Externí odkaz:
http://arxiv.org/abs/2202.10552
Publikováno v:
In Stochastic Processes and their Applications December 2024 178
Publikováno v:
In Metabolic Engineering May 2024 83:86-101
Autor:
Dinh, Marc, Fromion, Vincent
The purpose of this paper is to show that it is possible to replace Monod's type model of a chemostat by a constraint based model of bacteria at the genome scale. This new model is an extension of the RBA model of bacteria developed in a batch mode t
Externí odkaz:
http://arxiv.org/abs/1911.06696
Autor:
Bulović, Ana, Fischer, Stephan, Dinh, Marc, Golib, Felipe, Liebermeister, Wolfram, Poirier, Christian, Tournier, Laurent, Klipp, Edda, Fromion, Vincent, Goelzer, Anne
Resource Balance Analysis (RBA) is a computational method based on resource allocation, which performs accurate quantitative predictions of whole-cell states (i.e. growth rate, meta-bolic fluxes, abundances of molecular machines including enzymes) ac
Externí odkaz:
http://arxiv.org/abs/1906.04525
Publikováno v:
PLOS ONE 15, no. 1 (January 16, 2020): e0226016
In this article, we quantitatively study, through stochastic models, the efects of several intracellular phenomena, such as cell volume growth, cell division, gene replication as well as fuctuations of available RNA polymerases and ribosomes. These p
Externí odkaz:
http://arxiv.org/abs/1711.06378
This paper is concerned with incremental stability properties of nonlinear systems. We propose conditions to compute an upper bound on the incremental L2-gain and to assess incremental asymptotic stability of piecewise-affine (PWA) systems. The condi
Externí odkaz:
http://arxiv.org/abs/1611.08322
Lur'e-type nonlinear systems are virtually ubiquitous in applied control theory, which explains the great interest they have attracted throughout the years. The purpose of this paper is to propose conditions to assess incremental asymptotic stability
Externí odkaz:
http://arxiv.org/abs/1611.08327