Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Franziska Zickmann"'
Autor:
Bernhard Y. Renard, Franziska Zickmann
Publikováno v:
Bioinformatics
Summary: Ongoing advances in high-throughput technologies have facilitated accurate proteomic measurements and provide a wealth of information on genomic and transcript level. In proteogenomics, this multi-omics data is combined to analyze unannotate
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a7b60ce857d094d701bbd8d6c01668ce
https://doi.org/10.1093/bioinformatics/btv236
https://doi.org/10.1093/bioinformatics/btv236
Publikováno v:
Bioinformatics. 30:9-16
Motivation: Accurate estimation, comparison and evaluation of read mapping error rates is a crucial step in the processing of next-generation sequencing data, as further analysis steps and interpretation assume the correctness of the mapping results.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0273a44ce3c139bfff77319abee7ae5c
https://doi.org/10.1093/bioinformatics/btt255
https://doi.org/10.1093/bioinformatics/btt255
Publikováno v:
Methods in Molecular Biology ISBN: 9781493931057
Recent studies have demonstrated that mass spectrometry-based variant detection is feasible. Typically, either genomic variant databases or transcript data are used to construct customized target databases for the identification of single-amino acid
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c25384c1bd9e8ce27667091f2a6fb3cc
https://doi.org/10.1007/978-1-4939-3106-4_16
https://doi.org/10.1007/978-1-4939-3106-4_16
Autor:
Bernhard Y. Renard, Franziska Zickmann
Publikováno v:
BMC Genomics
Background Gene prediction is a challenging but crucial part in most genome analysis pipelines. Various methods have evolved that predict genes ab initio on reference sequences or evidence based with the help of additional information, such as RNA-Se
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26c35202cb81c695d92a93ea327dd7c8
http://europepmc.org/articles/PMC4345001
http://europepmc.org/articles/PMC4345001
Publikováno v:
PLoS Currents
While initial phylogenetic analyses concluded to Guinea 2014 EBOV falling outside the ZaOre lineage (ZEBOV), a recent re-analysis of the same dataset by Dudas and Rambaut (2014) suggested that Guinea 2014 EBOV actually is ZEBOV. Under the same hypoth
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d10504196bf8b45d0959817f612745f
http://europepmc.org/articles/PMC4073806
http://europepmc.org/articles/PMC4073806
Publikováno v:
Bioinformatics (Oxford, England). 30(5)
Motivation: The reliable identification of genes is a major challenge in genome research, as further analysis depends on the correctness of this initial step. With high-throughput RNA-Seq data reflecting currently expressed genes, a particularly mean
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::88fa214a17a9c22054e4a6c75dd9bec3
https://pubmed.ncbi.nlm.nih.gov/24123675
https://pubmed.ncbi.nlm.nih.gov/24123675
Publikováno v:
Bioinformatics (Oxford, England). 29(10)
Motivation: Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in comput
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7344d80988be883d9d343a9d1f020fb7
https://pubmed.ncbi.nlm.nih.gov/23589648
https://pubmed.ncbi.nlm.nih.gov/23589648
Autor:
Marc Kirchner, Norbert W. Brattig, Hanno Steen, Fred A. Hamprecht, Franziska Zickmann, Dominic Winter, Amit Tzur, Buote Xu, Simone Korten, Bernhard Y. Renard
Publikováno v:
Molecular & Cellular Proteomics : MCP
Currently, the reliable identification of peptides and proteins is only feasible when thoroughly annotated sequence databases are available. Although sequencing capacities continue to grow, many organisms remain without reliable, fully annotated refe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6033dd60469ba228097cb151700e6043
https://pubmed.ncbi.nlm.nih.gov/22493179
https://pubmed.ncbi.nlm.nih.gov/22493179
Publikováno v:
Bioinformatics
Bioinformatics, 2011, 27 (13), pp.i248-i256. ⟨10.1093/bioinformatics/btr210⟩
Bioinformatics, Oxford University Press (OUP), 2011, 27 (13), pp.i248-i256. ⟨10.1093/bioinformatics/btr210⟩
Bioinformatics, 2011, 27 (13), pp.i248-i256. ⟨10.1093/bioinformatics/btr210⟩
Bioinformatics, Oxford University Press (OUP), 2011, 27 (13), pp.i248-i256. ⟨10.1093/bioinformatics/btr210⟩
Motivation: In systematic biology, one is often faced with the task of comparing different phylogenetic trees, in particular in multi-gene analysis or cospeciation studies. One approach is to use a tanglegram in which two rooted phylogenetic trees ar
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::46697677dcee84828bbeec3a88ac4baa
https://hal.science/hal-02155176
https://hal.science/hal-02155176