Author Correction: Community assessment of methods to deconvolve cellular composition from bulk gene expression

Autor: Brian S. White, Aurélien de Reyniès, Aaron M. Newman, Joshua J. Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E. Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A. Catania, Benjamin J. Lang, Thomas J. Bertus, Carlo Piermarocchi, Francesca P. Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E. Liliental, Stockard Simon, Tumor Deconvolution DREAM Challenge consortium, Julio Saez-Rodriguez, Laura M. Heiser, Justin Guinney, Andrew J. Gentles

Publikováno v: Nature Communications, Vol 15, Iss 1, Pp 1-2 (2024)

Externí odkaz: https://doaj.org/article/60d2aa816a5d4ae3ae77059ab8a373e3

Protocol to estimate cell type proportions from bulk RNA-seq using DAISM-DNNXMBD

Autor: Yating Lin, Shangze Wu, Xu Xiao, Jingbo Zhao, Minshu Wang, Haojun Li, Kejia Wang, Minwei Zhang, Frank Zheng, Wenxian Yang, Lei Zhang, Jiahuai Han, Rongshan Yu

Publikováno v: STAR Protocols, Vol 3, Iss 3, Pp 101587- (2022)

Summary: Computational protocols for cell type deconvolution from bulk RNA-seq data have been used to understand cellular heterogeneity in disease-related samples, but their performance can be impacted by batch effect among datasets. Here, we present

Externí odkaz: https://doaj.org/article/fd5b1ca784704befac6881ebfd615109

Sequencing by Avidity Enables High Accuracy With Low Reagent Consumption

Autor: Sinan Arslan, Matthew Kellinger, Semyon Kruglyak, Jake LeVieux, Adeline Mah, Haosen Wang, Junhua Zhao, Chunhong Zhou, John Bailey, Matthew Byrne, Chiting Chang, Steve Chen, Claudia Dennler, Samantha Dennler, Vivian Dien, Derek Fuller, Francisco Garcia, Minghao Guo, Ryan Kelley, Omid Khandan, Michael Klein, Michael Kim, Bill Lin, Yu Liu, Tyler Lopez, Peter Mains, Andrew Price, Hermes Taylor, Ramreddy Tippana, Austin Tomaney, Richard Zhang, Minna Abtahi, Mark Ambroso, Rosi Bajari, Ava Bellizi, Chris Benitez, Daniel Berard, Lorenzo Berti, Kelly Blease, Angela Blum, Andrew Boddicker, Leo Bondar, Chris Bui, Kevin Cappa, Joshua Chan, Victor Chang, Katia Charov, Xiyi Chen, Rodger Constandse, Weston Damron, Mariam Dawood, Nicole Debruno, John Dmalanta, Laure Edoli, Keerthi Elango, Nikka Faustino, Chao Feng, Matthew Ferrari, Kieth Frankie, Adam Fries, Anne Galloway, Vlad Gavrila, Gregory Gemmen, James Ghadiali, Logan Goddard, Adriana Roginski, Garren Hendricks, Jendrick Hentschel, Doris Hseih, Yu-Hsein Hwang-fu, Scott Im, Chaoyi Jin, Daniel Kincade, Bryan Lajooie, Shawn Levy, Yu Li, Vincent Liang, William Light, Jonathan Lipsher, Tsungli Liu, Guixia Long, Rui Ma, Jack Mailloux, Kyle Mandla, Anyssa Martinez, Max Mass, Michael Meron, Celyne Moh, Rachel Moore, Juan Moreno, Jordan Neysmith, Cassandra Niman, Jesus Nunez, Micah Ojeda, Jenna Owens, Sara Espinosa Ortiz, Geoffrey Piland, Dan Proctor, Josua Purba, Michael Ray, Daisong Rong, Virginia Saade, Sanchari Saha, Luqmanal Sirajudeen, Gudrun Stengel, Ryan Stinson, Michael Stone, Keoni Sundseth, Eileen Thai, Connor Thompson, Gustav Santo Tomas, Christy Trejo, Greg Trieger, Diane Truong, Ben Tse, Benjamin Voiles, Henry Vuong, Jennifer Wong, Chiung-Ting Wu, Hua Yu, Ming Yu, Cindy Zhang, Da Zhao, Frank Zheng, Molly He, Michael Previte

We present a novel sequencing chemistry implemented as part of the AVITI system. Relying on the proximal DNA binding sites created through DNA amplification on a solid support, avidity sequencing uses multivalent nucleotide ligands on dye-labeled cor

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::f97fa97146160e939ade0e785052a2c6
https://doi.org/10.21203/rs.3.rs-1965701/v1

I share, therefore I know? Sharing online content ‐ even without reading it ‐ inflates subjective knowledge

Autor: Adrian F. Ward, Jianqing (Frank) Zheng, Susan M. Broniarczyk

Publikováno v: Journal of Consumer Psychology.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::a39fd27823fbe71d7482926f54760407
https://doi.org/10.1002/jcpy.1321

DAISM-DNN

Autor: Yating, Lin, Haojun, Li, Xu, Xiao, Lei, Zhang, Kejia, Wang, Jingbo, Zhao, Minshu, Wang, Frank, Zheng, Minwei, Zhang, Wenxian, Yang, Jiahuai, Han, Rongshan, Yu

Publikováno v: Patterns (New York, N.Y.). 3(3)

Understanding the immune cell abundance of cancer and other disease-related tissues has an important role in guiding disease treatments. Computational cell type proportion estimation methods have been previously developed to derive such information f

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::6aafac75643f039950f038fa8f253d77
https://pubmed.ncbi.nlm.nih.gov/35510186