Zobrazeno 1 - 10
of 54
pro vyhledávání: '"Francesco Rao"'
Publikováno v:
PLoS Computational Biology, Vol 8, Iss 3, p e1002429 (2012)
A general paradigm to understand protein function is to look at properties of isolated well conserved domains, such as SH3 or PDZ domains. While common features of domain families are well understood, the role of subtle differences among members of t
Externí odkaz:
https://doaj.org/article/bea6f33955b1473c9f9e7ce2d134174d
The science of complex biological networks is transforming research in areas ranging from evolutionary biology to medicine. This is the first book on the subject, providing a comprehensive introduction to complex network science and its biological ap
Summary: Wordom is a versatile program for manipulation of molecular dynamics trajectories and efficient analysis of simulations. Original tools in Wordom include a procedure to evaluate significance of sampling for principal component analysis as we
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3f25abba7c4550e548deacd66ffd58b
http://doc.rero.ch/record/301673/files/btm378.pdf
http://doc.rero.ch/record/301673/files/btm378.pdf
Autor:
Francesco Rao, Johannes V. Barth, Florian Klappenberger, Jonas Björk, Carlos-Andres Palma, Dirk Kühne
Publikováno v:
Nano Letters. 14:4461-4468
Artificial molecular switches, rotors, and machines are set to establish design rules and applications beyond their biological counterparts. Herein we exemplify the role of noncovalent interactions and transient rearrangements in the complex behavior
Publikováno v:
Journal of Oral Implantology. 39:333-338
The aim of the present study was to compare immediate (Im) versus delayed (De) placement of laser-treated implants surface with switching platform to confirm the predictability and performance of this type of implant. The implants were placed in pos
Autor:
Francesca Fanelli, Francesco Rao, Amedeo Caflisch, Angelo Nicola Felline, Francesco Raimondi, Stefanie Muff, Michele Seeber, Ran Friedman
Publikováno v:
Journal of Computational Chemistry
Wordom is a versatile, user-friendly, and efficient program for manipulation and analysis of molecular structures and dynamics. The following new analysis modules have been added since the publication of the original Wordom paper in 2007: assignment
Autor:
Francesco Rao
Publikováno v:
Journal of Computational Chemistry. 32:1113-1116
Network-based methods provide an accurate description of the free-energy landscape of peptides and proteins sampled by molecular dynamics simulations. To that end, it is necessary to group the individual snapshots in a meaningful way. The inherent st
Autor:
Thomas M. A. Fink, Paolo De Los Rios, Michele Vendruscolo, Mark Buchanan, Sebastian E. Ahnert, Francesco Rao, G. Caldarelli, Guido Caldarelli
Publikováno v:
Networks in Cell Biology
Autor:
Martin Karplus, Francesco Rao
Publikováno v:
Proceedings of the National Academy of Sciences. 107:9152-9157
Molecular dynamics (MD) simulations provide essential information about the thermodynamics and dynamics of proteins. To construct the free-energy surface from equilibrium trajectories, it is necessary to group the individual snapshots in a meaningful
Autor:
Francesco Rao
Publikováno v:
The Journal of Physical Chemistry Letters. 1:1580-1583
Laboratoire de Chimie Biophysique/ISIS, Universite de Strasbourg, 8 alle G. Monge, Strasbourg, FranceABSTRACT The relationship between local atomic fluctuations and global pro-teinrearrangementsiselusive.Here,moleculardynamicssimulationsofapeptidecon