The relationship between orthology, protein domain architecture and protein function

Autor: Forslund, Kristoffer

Lacking experimental data, protein function is often predicted from evolutionary and protein structure theory. Under the 'domain grammar' hypothesis the function of a protein follows from the domains it encodes. Under the 'orthology conjecture', orth

Externí odkaz: http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-62152

Peer review of 'Genome Annotation Generator: A simple tool for generating and correcting WGS annotation tables for NCBI submission'

Autor: Forslund, Kristoffer

This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::7f8f9d79534d1abcf8f900ee3db232e9

Domain architecture conservation in orthologs

Autor: Pekkari Isabella, Forslund Kristoffer, Sonnhammer Erik LL

Publikováno v: BMC Bioinformatics, Vol 12, Iss 1, p 326 (2011)

Abstract Background As orthologous proteins are expected to retain function more often than other homologs, they are often used for functional annotation transfer between species. However, ortholog identification methods do not take into account chan

Externí odkaz: https://doaj.org/article/b63cb9d118fe4477862f4eef2fe4cf2b

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream

Autor: Boeckmann, Brigitte, Marcet Houben, Marina, Rees, Jonathan A., Forslund, Kristoffer, Huerta Cepas, Jaime, Muffato, Matthieu, Yilmaz, Pelin, Xenarios, Ioannis, Bork, Peer, Lewis, Suzanna E., Gabaldón Estevan, Juan Antonio, 1973, Quest for Orthologs Species Tree Working Group

Publikováno v: Genome Biology and Evolution
Genome Biology and Evolution, vol. 7, no. 7, pp. 1988-1999
Recercat. Dipósit de la Recerca de Catalunya
instname

Quest for Orthologs (QfO) is a community effort with the goal to improve and benchmark orthology predictions. As quality assessment assumes prior knowledge on species phylogenies, we investigated the congruency between existing species trees by compa

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::511459ceabd5d9bf3739c7afcd14a412
https://doi.org/10.1093/gbe/evv121

Corrigendum:Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Autor: Forslund, Kristoffer, Hildebrand, Falk, Nielsen, Trine, Falony, Gwen, Le Chatelier, Emmanuelle, Sunagawa, Shinichi, Prifti, Edi, Vieira-Silva, Sara, Gudmundsdottir, Valborg, Pedersen, Helle Krogh, Arumugam, Manimozhiyan, Kristiansen, Karsten, Voigt, Anita Yvonne, Vestergaard, Henrik, Hercog, Rajna, Costea, Paul Igor, Kultima, Jens Roat, Li, Junhua, Jørgensen, Torben, Levenez, Florence, Doré, Joël, Nielsen, Henrik Bjørn, Brunak, Søren, Raes, Jeroen, Hansen, Torben, Wang, Jun, Ehrlich, S. Dusko, Bork, Peer, Pedersen, Oluf

Publikováno v: Forslund, K, Hildebrand, F, Nielsen, T, Falony, G, Le Chatelier, E, Sunagawa, S, Prifti, E, Vieira-Silva, S, Gudmundsdottir, V, Pedersen, H K, Arumugam, M, Kristiansen, K, Voigt, A Y, Vestergaard, H, Hercog, R, Costea, P I, Kultima, J R, Li, J, Jørgensen, T, Levenez, F, Doré, J, Nielsen, H B, Brunak, S, Raes, J, Hansen, T, Wang, J, Ehrlich, S D, Bork, P, Pedersen, O & MetaHIT consortium 2017, ' Corrigendum : Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota ', Nature, vol. 545, no. 7652, pp. 116 . https://doi.org/10.1038/nature22318

Nature 528, 262–266 (2015); doi:10.1038/nature15766 In the Supplementary Information to this Letter, data from two previous studies were used in the meta-analysis. However, the unit conversions used to make the data comparable were inconsistent for

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bd6a3d10bf397b7577cdb82e0c9d8a10
https://vbn.aau.dk/da/publications/c9e59393-1472-4138-9fa3-97febc1749b3