Integrative analysis of multimodal mass spectrometry data in MZmine 3.

Autor: Schmid R; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany.; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic., Heuckeroth S; Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany., Korf A; Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany., Smirnov A; Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, USA., Myers O; Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, USA., Dyrlund TS; Steno Diabetes Center Copenhagen, Gentofte, Denmark., Bushuiev R; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic., Murray KJ; Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota - Twin Cities, Minneapolis, MN, USA., Hoffmann N; Institute for Bio- and Geosciences (IBG-5), Forschungszentrum Jülich GmbH, Jülich, Germany., Lu M; School of Engineering, Westlake University, Hangzhou, China., Sarvepalli A; BlockLab, Center for Large Datasystems Research, San Diego Supercomputer Center, La Jolla, CA, USA., Zhang Z; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Fleischauer M; Chair for Bioinformatics, Friedrich Schiller University Jena, Jena, Germany., Dührkop K; Chair for Bioinformatics, Friedrich Schiller University Jena, Jena, Germany., Wesner M; Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany., Hoogstra SJ; Agriculture and Agri-Food Canada, London Research and Development Centre, London, Ontario, Canada., Rudt E; Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany., Mokshyna O; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic., Brungs C; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic., Ponomarov K; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic., Mutabdžija L; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic., Damiani T; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic., Pudney CJ; Datacraft Technologies, Mosman Park, Washington, Western Australia, Australia., Earll M; Analytical Solutions Group, Product Technology and Engineering, Jealott's Hill International Research Centre, Bracknell, UK., Helmer PO; Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany., Fallon TR; Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Schulze T; Department of Effect-Directed Analysis, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany., Rivas-Ubach A; Ecology and Forest Genetics, Institute of Forest Sciences (ICIFOR-INIA-CSIC), Madrid, Spain., Bilbao A; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Richter H; Clinic for Diagnostic Imaging, Diagnostic Imaging Research Unit (DIRU), University of Zurich, Zürich, Switzerland., Nothias LF; School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland., Wang M; Department of Computer Science, University of California Riverside, Riverside, CA, USA., Orešič M; School of Medical Sciences, Örebro University, Örebro, Sweden.; Turku Bioscience Centre, University of Turku and Åbo Akademi University, Turku, Finland., Weng JK; Whitehead Institute for Biomedical Research, Cambridge, MA, USA.; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Böcker S; Chair for Bioinformatics, Friedrich Schiller University Jena, Jena, Germany., Jeibmann A; Institute of Neuropathology, University Hospital Münster, Münster, Germany., Hayen H; Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany., Karst U; Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Petras D; CMFI Cluster of Excellence, University of Tuebingen, Tuebingen, Germany., Du X; Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, USA., Pluskal T; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic. tomas.pluskal@uochb.cas.cz.

Publikováno v: Nature biotechnology [Nat Biotechnol] 2023 Apr; Vol. 41 (4), pp. 447-449.

A combinatorial sputtering method to prepare a wide range of A/B artificial superlattice structures on a single substrate

Autor: Barkhouse, D.A.R., Bonakdarpour, A., Fleischauer, M., Hatchard, T.D., Dahn, J.R. ^*

Publikováno v: In Journal of Magnetism and Magnetic Materials May 2003 261(3):399-409

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Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra.

Autor: Dührkop K; Chair for Bioinformatics, Friedrich-Schiller University, Jena, Germany., Nothias LF; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA., Fleischauer M; Chair for Bioinformatics, Friedrich-Schiller University, Jena, Germany., Reher R; Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA., Ludwig M; Chair for Bioinformatics, Friedrich-Schiller University, Jena, Germany., Hoffmann MA; Chair for Bioinformatics, Friedrich-Schiller University, Jena, Germany.; International Max Planck Research School 'Exploration of Ecological Interactions with Molecular and Chemical Techniques', Max Planck Institute for Chemical Ecology, Jena, Germany., Petras D; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA., Gerwick WH; Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA., Rousu J; Helsinki Institute for Information Technology, Department of Computer Science, Aalto University, Espoo, Finland., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA., Böcker S; Chair for Bioinformatics, Friedrich-Schiller University, Jena, Germany. sebastian.boecker@uni-jena.de.

Publikováno v: Nature biotechnology [Nat Biotechnol] 2021 Apr; Vol. 39 (4), pp. 462-471. Date of Electronic Publication: 2020 Nov 23.

Current approaches and outstanding challenges of functional annotation of metabolites: a comprehensive review.

Autor: Nguyen, Quang-Huy¹ (AUTHOR), Nguyen, Ha¹ (AUTHOR), Oh, Edwin C² (AUTHOR), Nguyen, Tin¹ (AUTHOR) tinn@auburn.edu

Publikováno v: Briefings in Bioinformatics. Nov2024, Vol. 25 Issue 6, p1-17. 17p.