An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Autor: Chen Keasar, Liam J. McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Hassan A. Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena A. Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam K. Sieradzan, Magdalena Ślusarz, Rafal Ślusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, Yanping Yin, Yang Zhang, Jaume Bacardit, Maciej Baranowski, Nicholas Chapman, Seth Cooper, Alexandre Defelicibus, Jeff Flatten, Brian Koepnick, Zoran Popović, Bartlomiej Zaborowski, David Baker, Jianlin Cheng, Cezary Czaplewski, Alexandre Cláudio Botazzo Delbem, Christodoulos Floudas, Andrzej Kloczkowski, Stanislaw Ołdziej, Michael Levitt, Harold Scheraga, Chaok Seok, Johannes Söding, Saraswathi Vishveshwara, Dong Xu, Foldit Players consortium, Silvia N. Crivelli

Publikováno v: Scientific Reports, Vol 8, Iss 1, Pp 1-18 (2018)

Abstract Every two years groups worldwide participate in the Critical Assessment of Protein Structure Prediction (CASP) experiment to blindly test the strengths and weaknesses of their computational methods. CASP has significantly advanced the field

Externí odkaz: https://doaj.org/article/b0b847aec1154062a3c86bac14d94e55

Determining crystal structures through crowdsourcing and coursework

Autor: Scott Horowitz, Brian Koepnick, Raoul Martin, Agnes Tymieniecki, Amanda A. Winburn, Seth Cooper, Jeff Flatten, David S. Rogawski, Nicole M. Koropatkin, Tsinatkeab T. Hailu, Neha Jain, Philipp Koldewey, Logan S. Ahlstrom, Matthew R. Chapman, Andrew P. Sikkema, Meredith A. Skiba, Finn P. Maloney, Felix R. M. Beinlich, Foldit Players, University of Michigan students, Zoran Popović, David Baker, Firas Khatib, James C. A. Bardwell

Publikováno v: Nature Communications, Vol 7, Iss 1, Pp 1-11 (2016)

Building crystal structures into the electron density is an important step in protein structure solution. Here, the authors recruit online game players, students, and experienced crystallographers to compete in a competition to solve a new structure,

Externí odkaz: https://doaj.org/article/b15fb233272548d7bc0404a5bf35e26f

An initial examination of computer programs as creative works

Autor: Trina C. Kershaw, Ralph D. Clifford, Firas Khatib, Adnan El-Nasan

Publikováno v: Psychology of Aesthetics, Creativity, and the Arts.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::19149652276181a69752496c77f196a3
https://doi.org/10.1037/aca0000457

Correction: Corrigendum: Determining crystal structures through crowdsourcing and coursework

Autor: Scott Horowitz, Brian Koepnick, Raoul Martin, Agnes Tymieniecki, Amanda A. Winburn, Seth Cooper, Jeff Flatten, David S. Rogawski, Nicole M. Koropatkin, Tsinatkeab T. Hailu, Neha Jain, Philipp Koldewey, Logan S. Ahlstrom, Matthew R. Chapman, Andrew P. Sikkema, Meredith A. Skiba, Finn P. Maloney, Felix R. M. Beinlich, Foldit Players, University of Michigan students, Zoran Popović, David Baker, Firas Khatib, James C. A. Bardwell

Publikováno v: Nature Communications, Vol 7, Iss 1, Pp 1-2 (2016)

Nature Communications 7: Article number:12549 (2016); Published 16 September 2016; Updated 25 October 2016 The original version of this Article contained an error in the spelling of a member of the University of Michigan students Consortium, Sam Lee,

Externí odkaz: https://doaj.org/article/1232003cb40a496181d47d61db72f8c2

Brief of Amicus Curiae Interdisciplinary Research Team on Programmer Creativity Addressing Expressions and Ideas

Autor: Kavitha Chandra, Firas Khatib, Ralph D. Clifford, Trina C. Kershaw, Jay McCarthy

Publikováno v: SSRN Electronic Journal.

Google v. Oracle is a case involving the meaning of a copyright in computer software. The trial determined that Google copied many thousands of lines of code that had been written by Oracle. The code that was taken defined the existence of specific c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d748ae79f83d0e577e7ad18cedf72d63
https://doi.org/10.2139/ssrn.3543792