An open dataset of Plasmodium vivax genome variation in 1,895 worldwide samples

Autor: Adam, Ishag, Alam, Mohammad Shafiul, Alemu, Sisay, Amaratunga, Chanaki, Amato, Roberto, Andrianaranjaka, Voahangy, Anstey, Nicholas M, Aseffa, Abraham, Ashley, Elizabeth, Assefa, Ashenafi, Auburn, Sarah, Barber, Bridget E, Barry, Alyssa, Batista Pereira, Dhelio, Cao, Jun, Chau, Nguyen Hoang, Chotivanich, Kesinee, Chu, Cindy, Dondorp, Arjen M, Drury, Eleanor, Echeverry, Diego F, Erko, Berhanu, Espino, Fe, Fairhurst, Rick, Faiz, Abdul, Fernanda Villegas, María, Gao, Qi, Golassa, Lemu, Goncalves, Sonia, Grigg, Matthew J, Hamedi, Yaghoob, Hien, Tran Tinh, Htut, Ye, Johnson, Kimberly J, Karunaweera, Nadira, Khan, Wasif, Krudsood, Srivicha, Kwiatkowski, Dominic P, Lacerda, Marcus, Ley, Benedikt, Lim, Pharath, Liu, Yaobao, Llanos-Cuentas, Alejandro, Lon, Chanthap, Lopera-Mesa, Tatiana, Marfurt, Jutta, Michon, Pascal, Miotto, Olivo, Mohammed, Rezika, Mueller, Ivo, Namaik-Larp, Chayadol, Newton, Paul N, Nguyen, Thuy-Nhien, Nosten, Francois, Noviyanti, Rintis, Pava, Zuleima, Pearson, Richard D, Petros, Beyene, Phyo, Aung P, Price, Ric N, Pukrittayakamee, Sasithon, Rahim, Awab Ghulam, Randrianarivelojosia, Milijaona, Rayner, Julian C, Rumaseb, Angela, Siegel, Sasha V, Simpson, Victoria J, Thriemer, Kamala, Tobon-Castano, Alberto, Trimarsanto, Hidayat, Urbano Ferreira, Marcelo, Vélez, Ivan D, Wangchuk, Sonam, Wellems, Thomas E, White, Nicholas J, William, Timothy, Yasnot, Maria F, Yilma, Daniel

This report describes the MalariaGEN Pv4 dataset, a new release of curated genome variation data on 1,895 samples of Plasmodium vivax collected at 88 worldwide locations between 2001 and 2017. It includes 1,370 new samples contributed by MalariaGEN a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::38a05a2b6f99fa999b5b710ff4a844c4
https://www.repository.cam.ac.uk/handle/1810/338715

An open dataset of Plasmodium vivax genome variation in 1,895 worldwide samples.

Autor: Adam I; Faculty of Medicine, University of Khartoum, Khartoum, Sudan., Alam MS; Infectious Diseases Division, International Centre for Diarrheal Diseases Research, Bangladesh (ICDDR,B), Dhaka, Bangladesh., Alemu S; Armauer Hansen Research Unit (AHRI), Addis Ababa, Ethiopia.; Addis Ababa University, Addis Ababa, Ethiopia.; MilliporeSigma (Bioreliance), Rockville, USA., Amaratunga C; National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, USA., Amato R; Wellcome Sanger Institute, Hinxton, UK., Andrianaranjaka V; Université d'Antananarivo, Antananarivo, Madagascar., Anstey NM; Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia., Aseffa A; Armauer Hansen Research Unit (AHRI), Addis Ababa, Ethiopia., Ashley E; Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK., Assefa A; Ethiopian Public Health Institute, Addis Ababa, Ethiopia., Auburn S; Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia.; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand., Barber BE; Menzies School of Health Research, Darwin, Australia.; QIMR Berghofer Medical Research Institute, Brisbane, Australia., Barry A; Walter and Eliza Hall Institute, Parkville, Australia.; Deakin University, Geelong, Australia.; Burnet Institute, Melbourne, Australia., Batista Pereira D; Centro de Pesquisa em Medicina Tropical de Rondônia, Porto Velho, Brazil., Cao J; National Health Commission Key Laboratory of Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases, Wuxi, China.; Center for Global Health, School of Public Health, Nanjing Medical University, Nanjing, China., Chau NH; Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam., Chotivanich K; Mahidol University, Bangkok, Thailand., Chu C; Shoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Thailand., Dondorp AM; Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand., Drury E; Wellcome Sanger Institute, Hinxton, UK., Echeverry DF; Departamento de Microbiologia, Facultad de Salud, Universidad del Valle, Cali, Colombia., Erko B; Aklilu Lemma Institute of Pathobiology, Addis Ababa University, Addis Ababa, Ethiopia., Espino F; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Fairhurst R; National Institutes of Health (NIH), Bethesda, USA., Faiz A; Dev Care Foundation, Dhaka, Bangladesh., Fernanda Villegas M; Centro de Investigaciones Clinicas, Cali, Colombia., Gao Q; National Health Commission Key Laboratory of Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases, Wuxi, China., Golassa L; Aklilu Lemma Institute of Pathobiology, Addis Ababa University, Addis Ababa, Ethiopia., Goncalves S; Wellcome Sanger Institute, Hinxton, UK., Grigg MJ; Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia., Hamedi Y; Infectious and Tropical Diseases Research Center, Hormozgan University of Medical Sciences, Bandar Abbas, Iran., Hien TT; Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam., Htut Y; Department of Medical Research, Yangon, Myanmar., Johnson KJ; Wellcome Sanger Institute, Hinxton, UK., Karunaweera N; University of Colombo, Colombo, Sri Lanka.; School of Public Health, Harvard University, Boston, USA., Khan W; Infectious Diseases Division, International Centre for Diarrheal Diseases Research, Bangladesh (ICDDR,B), Dhaka, Bangladesh., Krudsood S; Mahidol University, Bangkok, Thailand., Kwiatkowski DP; Wellcome Sanger Institute, Hinxton, UK., Lacerda M; Instituto de Pesquisa Clínica Carlos Borborema, Fundação de Medicina Tropical Dr Heitor Vieira Dourado, Manaus, Brazil.; Instituto Leônidas & Maria Deane, Fundação Oswaldo Cruz, Manaus, Brazil., Ley B; Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia., Lim P; National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, USA.; Parsons Corporation, Walter Reed Army Institute of Research (WRAIR), Silver Spring, USA., Liu Y; National Health Commission Key Laboratory of Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases, Wuxi, China.; Center for Global Health, School of Public Health, Nanjing Medical University, Nanjing, China., Llanos-Cuentas A; Cayetano Heredia University, Lima, Peru., Lon C; National Institute of Allergy and Infectious Diseases, Phnom Penh, Cambodia., Lopera-Mesa T; Universidad de Antioquia, Medellin, Colombia., Marfurt J; Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia., Michon P; National University of Vanuatu, Port-Vila, Vanuatu., Miotto O; Wellcome Sanger Institute, Hinxton, UK.; Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand., Mohammed R; Department of Internal Medicine, University of Gondar, Gondar, Ethiopia., Mueller I; Walter and Eliza Hall Institute, Parkville, Australia., Namaik-Larp C; Umphang Hospital, Tak, Thailand., Newton PN; Lao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK., Nguyen TN; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam., Nosten F; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Shoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Thailand., Noviyanti R; Eijkman Institute for Molecular Biology, Jakarta, Indonesia., Pava Z; Centro Internacionale de Entrenamiento e Investigaciones Medicas, Cali, Colombia., Pearson RD; Wellcome Sanger Institute, Hinxton, UK., Petros B; Addis Ababa University, Addis Ababa, Ethiopia., Phyo AP; Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand.; Shoklo Malaria Research Unit, Bangkok, Thailand., Price RN; Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia.; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand., Pukrittayakamee S; Mahidol University, Bangkok, Thailand., Rahim AG; Nangarhar Medical Faculty, Nangarhar University, Ministry of Higher Education, Jalalabad, Afghanistan., Randrianarivelojosia M; Institut Pasteur de Madagascar, Antananarivo, Madagascar.; Universités d'Antananarivo et de Mahajanga, Antananarivo, Madagascar., Rayner JC; Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK., Rumaseb A; Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia., Siegel SV; Wellcome Sanger Institute, Hinxton, UK., Simpson VJ; Wellcome Sanger Institute, Hinxton, UK., Thriemer K; Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia., Tobon-Castano A; Universidad de Antioquia, Medellin, Colombia., Trimarsanto H; Eijkman Institute for Molecular Biology, Jakarta, Indonesia., Urbano Ferreira M; Universidade de São Paulo, São Paulo, Brazil.; Institute of Hygiene and Tropical Medicine, NOVA University of Lisbon, Lisbon, Portugal., Vélez ID; University of Antioquia, Medellin, Colombia., Wangchuk S; Royal Center for Disease Control, Department of Public Health, Ministry of Health, Thimphu, Bhutan., Wellems TE; National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, USA., White NJ; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand., William T; Clinical Research Centre, Queen Elizabeth Hospital, Sabah, Malaysia.; Infectious Diseases Society Sabah-Menzies School of Health Research Clinical Research Unit, Kota Kinabalu, Sabah, Malaysia., Yasnot MF; Grupo de Investigaciones Microbiológicas y Biomédicas de Córdoba-GIMBIC, Universidad de Córdoba, Monteria, Colombia., Yilma D; Jimma University, Jimma, Ethiopia.

Publikováno v: Wellcome open research [Wellcome Open Res] 2022 Apr 14; Vol. 7, pp. 136. Date of Electronic Publication: 2022 Apr 14 (Print Publication: 2022).