Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Felix Van der Jeugt"'
Autor:
Charlotte Van Petegem, Rien Maertens, Niko Strijbol, Jorg Van Renterghem, Felix Van der Jeugt, Bram De Wever, Peter Dawyndt, Bart Mesuere
Publikováno v:
SoftwareX, Vol 24, Iss , Pp 101578- (2023)
Dodona (dodona.ugent.be) is an intelligent tutoring system for computer programming. It provides real-time data and feedback to help students learn better and teachers teach better.Dodona is free to use and has more than 61 thousand registered users
Externí odkaz:
https://doaj.org/article/3d9a53b8bc0f4107b6fe7605479adfcb
Autor:
Felix Van der Jeugt, Rien Maertens, Aranka Steyaert, Pieter Verschaffelt, Caroline De Tender, Peter Dawyndt, Bart Mesuere
Publikováno v:
BMC Genomics, Vol 23, Iss 1, Pp 1-16 (2022)
Abstract Background Shotgun metagenomics yields ever richer and larger data volumes on the complex communities living in diverse environments. Extracting deep insights from the raw reads heavily depends on the availability of fast, accurate and user-
Externí odkaz:
https://doaj.org/article/dde9e344c5cf4d13ae5610339ec9ba8d
Publikováno v:
BMC Bioinformatics, Vol 23, Iss 1, Pp 1-8 (2022)
Abstract Background FragGeneScan is currently the most accurate and popular tool for gene prediction in short and error-prone reads, but its execution speed is insufficient for use on larger data sets. The parallelization which should have addressed
Externí odkaz:
https://doaj.org/article/99e04db18ea145f38b39027358344e10
Autor:
Charles Dumolin, Maarten Aerts, Bart Verheyde, Simon Schellaert, Tim Vandamme, Felix Van der Jeugt, Evelien De Canck, Margo Cnockaert, Anneleen D. Wieme, Ilse Cleenwerck, Jindrich Peiren, Peter Dawyndt, Peter Vandamme, Aurélien Carlier
Publikováno v:
mSystems, Vol 4, Iss 5 (2019)
ABSTRACT The isolation of microorganisms from microbial community samples often yields a large number of conspecific isolates. Increasing the diversity covered by an isolate collection entails the implementation of methods and protocols to minimize t
Externí odkaz:
https://doaj.org/article/e77ff3e9251f4d39ae16f6485fa97af1
Autor:
Dries Schaumont, Elisabeth Veeckman, Felix Van der Jeugt, Annelies Haegeman, Sabine van Glabeke, Yves Bawin, Joanna Lukasiewicz, Sebastien Blugeon, Philippe Barre, Maria de la O Leyva-Pérez, Stephen Byrne, Peter Dawyndt, Tom Ruttink
Here we present SMAP, a software package that implements a suite of computational tools to extract multi-allelic haplotypes using read-backed haplotyping. SMAP tools first perform accurate read processing and analyze read mapping distributions across
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1edbf71eb24c477c4af774709e721531
https://doi.org/10.1101/2022.03.10.483555
https://doi.org/10.1101/2022.03.10.483555
Publikováno v:
BMC BIOINFORMATICS
Background FragGeneScan is currently the most accurate and popular tool for gene prediction in short and error-prone reads, but its execution speed is insufficient for use on larger data sets. The parallelization which should have addressed this is i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::30bdf431e63d5166cf8c1147253c2770
https://pubmed.ncbi.nlm.nih.gov/35643462
https://pubmed.ncbi.nlm.nih.gov/35643462
Autor:
Caroline De Tender, Aranka Steyaert, Felix Van der Jeugt, Pieter Verschaffelt, Bart Mesuere, Rien Maertens, Peter Dawyndt
Publikováno v:
BMC GENOMICS
Background Shotgun metagenomics yields ever richer and larger data volumes on the complex communities living in diverse environments. Extracting deep insights from the raw reads heavily depends on the availability of fast, accurate and user-friendly
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3aaacb462cc7980945e7011d1dbe337
https://doi.org/10.1101/2021.05.18.444604
https://doi.org/10.1101/2021.05.18.444604
Autor:
Antonio Palomba, Robbert Gurdeep Singh, Alessandro Tanca, Bart Mesuere, Felix Van der Jeugt, Pieter Verschaffelt, Peter Dawyndt, Lennart Martens, Sergio Uzzau
Publikováno v:
Journal of Proteome Research. 18:606-615
Unipept ( https://unipept.ugent.be ) is a web application for metaproteome data analysis, with an initial focus on tryptic-peptide-based biodiversity analysis of MS/MS samples. Because the true potential of metaproteomics lies in gaining insight into
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9c4e7e6fb276ead4e7781385b77de452
https://doi.org/10.1021/acs.jproteome.8b00716
https://doi.org/10.1021/acs.jproteome.8b00716
Autor:
Pieter Verschaffelt, Felix Van der Jeugt, Tim Van Den Bossche, Philippe Van Thienen, Caroline De Tender, Lennart Martens, Bart Mesuere, Peter Dawyndt
Publikováno v:
Bioinformatics. 36:4220-4221
Summary Unipept is an ecosystem of tools developed for fast metaproteomics data-analysis consisting of a web application, a set of web services (application programming interface, API) and a command-line interface (CLI). After the successful introduc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34f5b45eafa3791e5502cf035a07d9e4
https://doi.org/10.1093/bioinformatics/btaa553
https://doi.org/10.1093/bioinformatics/btaa553
Autor:
Jindrich Peiren, Bart Verheyde, Anneleen D. Wieme, Simon Schellaert, Tim Vandamme, Felix Van der Jeugt, Charles Dumolin, Maarten Aerts, Margo Cnockaert, Aurélien Carlier, Evelien De Canck, Peter Dawyndt, Peter Vandamme, Ilse Cleenwerck
Publikováno v:
mSystems, Vol 4, Iss 5 (2019)
mSystems
mSystems, 2019, 4 (5), pp.e00437-19. ⟨10.1128/mSystems.00437-19⟩
MSYSTEMS
mSystems, Vol 4, Iss 5, p e00437-19 (2019)
mSystems
mSystems, 2019, 4 (5), pp.e00437-19. ⟨10.1128/mSystems.00437-19⟩
MSYSTEMS
mSystems, Vol 4, Iss 5, p e00437-19 (2019)
Estimation of the operational isolation units present in a MALDI-TOF mass spectral data set involves an essential dereplication step to identify redundant spectra in a rapid manner and without sacrificing biological resolution. We describe SPeDE, a n
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1b111a6c0b89805c683eb60049f8e17e
https://journals.asm.org/doi/10.1128/mSystems.00437-19
https://journals.asm.org/doi/10.1128/mSystems.00437-19