Zobrazeno 1 - 10
of 71
pro vyhledávání: '"Felipe H, Coutinho"'
Autor:
Pablo Sánchez, Felipe H. Coutinho, Marta Sebastián, Massimo C. Pernice, Raquel Rodríguez-Martínez, Guillem Salazar, Francisco Miguel Cornejo-Castillo, Stéphane Pesant, Xabier López-Alforja, Ester María López-García, Susana Agustí, Takashi Gojobori, Ramiro Logares, Maria Montserrat Sala, Dolors Vaqué, Ramon Massana, Carlos M. Duarte, Silvia G. Acinas, Josep M. Gasol
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-12 (2024)
Abstract The Ocean microbiome has a crucial role in Earth’s biogeochemical cycles. During the last decade, global cruises such as Tara Oceans and the Malaspina Expedition have expanded our understanding of the diversity and genetic repertoire of ma
Externí odkaz:
https://doaj.org/article/5c7246ea141c45dbae28f71507ce6edc
Autor:
Felipe H. Coutinho, Cynthia B. Silveira, Marta Sebastián, Pablo Sánchez, Carlos M. Duarte, Dolors Vaqué, Josep M. Gasol, Silvia G. Acinas
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-14 (2023)
Abstract Background Viruses play important roles in the ocean’s biogeochemical cycles. Yet, deep ocean viruses are one of the most under-explored fractions of the global biosphere. Little is known about the environmental factors that control the co
Externí odkaz:
https://doaj.org/article/e2b5a5c6fe01400986e50b16ebf1b853
Autor:
Simon Roux, Antonio Pedro Camargo, Felipe H Coutinho, Shareef M Dabdoub, Bas E Dutilh, Stephen Nayfach, Andrew Tritt
Publikováno v:
PLoS Biology, Vol 21, Iss 4, p e3002083 (2023)
The extraordinary diversity of viruses infecting bacteria and archaea is now primarily studied through metagenomics. While metagenomes enable high-throughput exploration of the viral sequence space, metagenome-derived sequences lack key information c
Externí odkaz:
https://doaj.org/article/24ba197aa8c4423985995c843c6de95c
Autor:
Bruno G. N. Andrade, Tobias Goris, Haithem Afli, Felipe H. Coutinho, Alberto M. R. Dávila, Rafael R. C. Cuadrat
Publikováno v:
BMC Microbiology, Vol 21, Iss 1, Pp 1-10 (2021)
Abstract Background The high incidence of bacterial genes that confer resistance to last-resort antibiotics, such as colistin, caused by mobilized colistin resistance (mcr) genes, poses an unprecedented threat to human health. Understanding the sprea
Externí odkaz:
https://doaj.org/article/a8e2a67612ae4b028de7fd024ca9dc8f
Autor:
Cynthia B. Silveira, Felipe H. Coutinho, Giselle S. Cavalcanti, Sean Benler, Michael P. Doane, Elizabeth A. Dinsdale, Robert A. Edwards, Ronaldo B. Francini-Filho, Cristiane C. Thompson, Antoni Luque, Forest L. Rohwer, Fabiano Thompson
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-11 (2020)
Abstract Background Bacteriophages encode genes that modify bacterial functions during infection. The acquisition of phage-encoded virulence genes is a major mechanism for the rise of bacterial pathogens. In coral reefs, high bacterial density and ly
Externí odkaz:
https://doaj.org/article/fb516305c9074858944c2cbaf4869d49
Autor:
José Germán Serrano-Gamboa, Carlos Abraham Fócil-Espinosa, Pedro J. Cabello-Yeves, Felipe H. Coutinho, Rafael Antonio Rojas-Herrera, Mónica Noel Sánchez-González
Publikováno v:
Microbiology Spectrum, Vol 10, Iss 1 (2022)
ABSTRACT Lignocellulose degradation by microbial consortia is multifactorial; hence, it must be analyzed from a holistic perspective. In this study, the temporal transcriptional activity of consortium PM-06, a nixtamalized maize pericarp (NMP) degrad
Externí odkaz:
https://doaj.org/article/364eb80cb3ce4241a7397768857fcd21
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Viruses play vital biogeochemical and ecological roles by (a) expressing auxiliary metabolic genes during infection, (b) enhancing the lateral transfer of host genes, and (c) inducing host mortality. Even in harsh and extreme environments, viruses ar
Externí odkaz:
https://doaj.org/article/0abe501c97f943ceb88e4f2e450d0c9b
Autor:
F. A. Bastiaan von Meijenfeldt, Ksenia Arkhipova, Diego D. Cambuy, Felipe H. Coutinho, Bas E. Dutilh
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-14 (2019)
Abstract Current-day metagenomics analyses increasingly involve de novo taxonomic classification of long DNA sequences and metagenome-assembled genomes. Here, we show that the conventional best-hit approach often leads to classifications that are too
Externí odkaz:
https://doaj.org/article/e2f82306a2f447aca0d7da181b561e44
Autor:
Maria Paz Ventero, Rafael R. C. Cuadrat, Inmaculada Vidal, Bruno G. N. Andrade, Carmen Molina-Pardines, Jose M. Haro-Moreno, Felipe H. Coutinho, Esperanza Merino, Luciana C. A. Regitano, Cynthia B. Silveira, Haithem Afli, Mario López-Pérez, Juan Carlos Rodríguez
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
BackgroundSARS-CoV-2 is an RNA virus causing COVID-19. The clinical characteristics and epidemiology of COVID-19 have been extensively investigated, however, only one study so far focused on the patient’s nasopharynx microbiota. In this study we in
Externí odkaz:
https://doaj.org/article/a6a8e25b17054db4bc428f149fb7b458
Autor:
Rilquer Mascarenhas, Flávia M. Ruziska, Eduardo Freitas Moreira, Amanda B. Campos, Miguel Loiola, Kaike Reis, Amaro E. Trindade-Silva, Felipe A. S. Barbosa, Lucas Salles, Rafael Menezes, Rafael Veiga, Felipe H. Coutinho, Bas E. Dutilh, Paulo R. Guimarães, Ana Paula A. Assis, Anderson Ara, José G. V. Miranda, Roberto F. S. Andrade, Bruno Vilela, Pedro Milet Meirelles
Publikováno v:
Frontiers in Genetics, Vol 10 (2020)
Studies in microbiology have long been mostly restricted to small spatial scales. However, recent technological advances, such as new sequencing methodologies, have ushered an era of large-scale sequencing of environmental DNA data from multiple biom
Externí odkaz:
https://doaj.org/article/3d12f1c2fcac40ad90c4cd0cbc89cdfe