Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

Autor: Munk, Patrick, Brinch, Christian, Møller, Frederik Duus, Petersen, Thomas N., Hendriksen, Rene S., Seyfarth, Anne Mette, Kjeldgaard, Jette S., Svendsen, Christina Aaby, van Bunnik, Bram, Berglund, Fanny, Bego, Artan, Power, Pablo, Rees, Catherine, Lambrinidis, Dionisia, Neilson, Elizabeth Heather Jakobsen, Gibb, Karen, Coventry, Kris, Collignon, Peter, Cassar, Susan, Allerberger, Franz, Begum, Anowara, Hossain, Zenat Zebin, Worrell, Carlon, Vandenberg, Olivier, Pieters, Ilse, Victorien, Dougnon Tamègnon, Gutierrez, Angela Daniela Salazar, Soria, Freddy, Grujić, Vesna Rudić, Mazalica, Nataša, Rahube, Teddie O., Tagliati, Carlos Alberto, Rodrigues, Dalia, Oliveira, Guilherme, de Souza, Larissa Camila Ribeiro, Ivanov, Ivan, Juste, Bonkoungou Isidore, Oumar, Traoré, Sopheak, Thet, Vuthy, Yith, Ngandijo, Antoinette, Nzouankeu, Ariane, Olivier, Ziem A. Abah Jacques, Yost, Christopher K., Kumar, Pratik, Brar, Satinder Kaur, Tabo, Djim-Adjim, Adell, Aiko D., Paredes-Osses, Esteban, Martinez, Maria Cristina, Cuadros-Orellana, Sara, Ke, Changwen, Zheng, Huanying, Baisheng, Li, Lau, Lok Ting, Chung, Teresa, Jiao, Xiaoyang, Yu, Yongjie, JiaYong, Zhao, Morales, Johan F. Bernal, Valencia, Maria Fernanda, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Hrenovic, Jasna, Jergović, Matijana, Karpíšková, Renáta, Deogratias, Zozo Nyarukweba, Elsborg, Bodil, Hansen, Lisbeth Truelstrup, Jensen, Pernille Erland, Abouelnaga, Mohamed, Salem, Mohamed Fathy, Koolmeister, Marliin, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Le Guyader, Soizick, Schaeffer, Julien, Villacis, Jose Eduardo, Sanneh, Bakary, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Schubert, Sara, Hesse, Sina, Berendonk, Thomas U., Saba, Courage Kosi Setsoafia, Mohammed, Jibril, Feglo, Patrick Kwame, Banu, Regina Ama, Kotzamanidis, Charalampos, Lytras, Efthymios, Lickes, Sergio A., Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Ballal, Mamatha, Bangera, Sohan Rodney, Fani, Fereshteh, Alebouyeh, Masoud, Morris, Dearbhaile, O’Connor, Louise, Cormican, Martin, Moran-Gilad, Jacob, Battisti, Antonio, Diaconu, Elena Lavinia, Corno, Gianluca, Di Cesare, Andrea, Alba, Patricia, Hisatsune, Junzo, Yu, Liansheng, Kuroda, Makoto, Sugai, Motoyuki, Kayama, Shizuo, Shakenova, Zeinegul, Kiiyukia, Ciira, Ng’eno, Eric, Raka, Lul, Jamil, Kazi, Fakhraldeen, Saja Adel, Alaati, Tareq, Bērziņš, Aivars, Avsejenko, Jeļena, Kokina, Kristina, Streikisa, Madara, Bartkevics, Vadims, Matar, Ghassan M., Daoud, Ziad, Pereckienė, Asta, Butrimaite-Ambrozeviciene, Ceslova, Penny, Christian, Bastaraud, Alexandra, Rasolofoarison, Tiavina, Collard, Jean-Marc, Samison, Luc Hervé, Andrianarivelo, Mala Rakoto, Banda, Daniel Lawadi, Amin, Arshana, Rajandas, Heraa, Parimannan, Sivachandran, Spiteri, David, Haber, Malcolm Vella, Santchurn, Sunita J., Vujacic, Aleksandar, Djurovic, Dijana, Bouchrif, Brahim, Karraouan, Bouchra, Vubil, Delfino Carlos, Pal, Pushkar, Schmitt, Heike, van Passel, Mark, Jeunen, Gert-Jan, Gemmell, Neil, Chambers, Stephen T., Mendoza, Fania Perez, Huete-Pιrez, Jorge, Vilchez, Samuel, Ahmed, Akeem Olayiwola, Adisa, Ibrahim Raufu, Odetokun, Ismail Ayoade, Fashae, Kayode, Sørgaard, Anne-Marie, Wester, Astrid Louise, Ryrfors, Pia, Holmstad, Rune, Mohsin, Mashkoor, Hasan, Rumina, Shakoor, Sadia, Gustafson, Natalie Weiler, Schill, Claudia Huber, Rojas, Maria Luz Zamudio, Velasquez, Jorge Echevarria, Magtibay, Bonifacio B., Catangcatang, Kris, Sibulo, Ruby, Yauce, Felipe Campos, Wasyl, Dariusz, Manaia, Celia, Rocha, Jaqueline, Martins, Jose, Álvaro, Pedro, Di Yoong Wen, Doris, Shin, Hanseob, Hur, Hor-Gil, Yoon, Sukhwan, Bosevska, Golubinka, Kochubovski, Mihail, Cojocaru, Radu, Burduniuc, Olga, Hong, Pei-Ying, Perry, Meghan Rose, Gassama, Amy, Radosavljevic, Vladimir, Tay, Moon Y. F., Zuniga-Montanez, Rogelio, Wuertz, Stefan, Gavačová, Dagmar, Pastuchová, Katarína, Truska, Peter, Trkov, Marija, Keddy, Karen, Esterhuyse, Kerneels, Song, Min Joon, Quintela-Baluja, Marcos, Lopez, Mariano Gomez, Cerdà-Cuéllar, Marta, Perera, R.R.D.P., Bandara, N.K.B.K.R.G.W., Premasiri, H.I., Pathirage, Sujatha, Charlemagne, Kareem, Rutgersson, Carolin, Norrgren, Leif, Örn, Stefan, Boss, Renate, Van der Heijden, Tanja, Hong, Yu-Ping, Kumburu, Happiness Houka, Mdegela, Robinson Hammerthon, Hounmanou, Yaovi Mahuton Gildas, Chonsin, Kaknokrat, Suthienkul, Orasa, Thamlikitkul, Visanu, de Roda Husman, Ana Maria, Bidjada, Bawimodom, Njanpop-Lafourcade, Berthe-Marie, Nikiema-Pessinaba, Somtinda Christelle, Levent, Belkis, Kurekci, Cemil, Ejobi, Francis, Kalule, John Bosco, Thomsen, Jens, Obaidi, Ouidiane, Jassim, Laila Mohamed, Moore, Andrew, Leonard, Anne, Graham, David W., Bunce, Joshua T., Zhang, Lihong, Gaze, William H., Lefor, Brett, Capone, Drew, Sozzi, Emanuele, Brown, Joe, Meschke, John Scott, Sobsey, Mark D., Davis, Michael, Beck, Nicola Koren, Sukapanpatharam, Pardi, Truong, Phuong, Lilienthal, Ronald, Kang, Sanghoon, Wittum, Thomas E., Rigamonti, Natalia, Baklayan, Patricia, Van, Chinh Dang, Tran, Doan Minh Nguyen, Do Phuc, Nguyen, Kwenda, Geoffrey, Larsson, D. G. Joakim, Koopmans, Marion, Woolhouse, Mark, Aarestrup, Frank M.

Publikováno v: Nature Communications, 13(1):7251. Nature Publishing Group
Nature Communications
Nature Communications (2041-1723) (Springer Science and Business Media LLC), 2022-12, Vol. 13, N. 1, P. 7251 (16p.)
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J S, Svendsen, C A, van Bunnik, B, Berglund, F, Global, S S C, Larsson, D G J, Koopmans, M, Woolhouse, M & Aarestrup, F M 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, no. 1, 7251 . https://doi.org/10.1038/s41467-022-34312-7
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J S, Svendsen, C A, van Bunnik, B, Berglund, F, Bego, A, Power, P, Rees, C, Lambrinidis, D, Neilson, E H J, Gibb, K, Coventry, K, Collignon, P, Cassar, S, Allerberger, F, Begum, A, Hossain, Z Z, Worrell, C, Vandenberg, O, Pieters, I, Victorien, D T, Gutierrez, A D S, Soria, F, Grujić, V R, Mazalica, N, Rahube, T O, Tagliati, C A, Rodrigues, D, Oliveira, G, de Souza, L C R, Ivanov, I, Juste, B I, Oumar, T, Sopheak, T, Vuthy, Y, Ngandijo, A, Nzouankeu, A, Olivier, Z A A J, Yost, C K, Hansen, L T, Jensen, P E, Parimannan, S, Hounmanou, Y M G, Thomsen, J, Aarestrup, F M & Global Sewage Surveillance Consortium 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, 7251 . https://doi.org/10.1038/s41467-022-34312-7
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J, Svendsen, C A, van Bunnik, B A D, Berglund, F, Larsson, D G J, Koopmans, M P G & Woolhouse, M & Aarestrup, F M 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, 7251 . https://doi.org/10.1038/s41467-022-34312-7

Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential to develop sustainable strategies combatting this threat. Here,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::303f29efecb5b8304deef73449e4f6cd
https://pure.eur.nl/en/publications/a8b1eb7a-a1f6-4d66-aec6-d86b000f9453

International Spread of an Epidemic Population of Salmonella enterica Serotype Kentucky ST198 Resistant to Ciprofloxacin

Autor: Le Hello, Simon, Hendriksen, Rene S., Doublet, Benoît, Fisher, Ian, Nielsen, Eva Møller, Whichard, Jean M., Bouchrif, Brahim, Fashae, Kayode, Granier, Sophie A., Silva, Nathalie Jourdan-Da, Cloeckaert, Axel, Threlfall, E. John, Angulo, Frederick J., Aarestrup, Frank M., Wain, John, Weill, François-Xavier

Publikováno v: The Journal of Infectious Diseases, 2011 Sep 01. 204(5), 675-684.

Externí odkaz: http://dx.doi.org/10.1093/infdis/jir409

Setting a baseline for global urban virome surveillance in sewage

Autor: Nieuwenhuijse, David F., Oude Munnink, Bas B., Phan, My V.T., Hendriksen, Rene S., Bego, Artan, Rees, Catherine, Neilson, Elizabeth Heather, Coventry, Kris, Collignon, Peter, Allerberger, Franz, Rahube, Teddie O., Oliveira, Guilherme, Ivanov, Ivan, Sopheak, Thet, Vuthy, Yith, Yost, Christopher K., Tabo, Djim adjim, Cuadros-Orellana, Sara, Ke, Changwen, Zheng, Huanying, Baisheng, Li, Jiao, Xiaoyang, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Hrenovic, Jasna, Jergović, Matijana, Karpíšková, Renáta, Elsborg, Bodil, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Villacis, Jose Eduardo, Sanneh, Bakary, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Saba, Courage Kosi Setsoafia, Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Alebouyeh, Masoud, Morris, Dearbhaile, O’Connor, Louise, Cormican, Martin, Moran-Gilad, Jacob, Battisti, Antonio, Alba, Patricia, Shakenova, Zeinegul, Kiiyukia, Ciira, Ng’eno, Eric, Raka, Lul, Bērziņš, Aivars, Avsejenko, Jeļena, Bartkevics, Vadims, Penny, Christian, Rajandas, Heraa, Parimannan, Sivachandran, Haber, Malcolm Vella, Pal, Pushkar, Schmitt, Heike, van Passel, Mark, van de Schans, Milou G.M., Zuidema, Tina, Jeunen, Gert Jan, Gemmell, Neil, Fashae, Kayode, Wester, Astrid Louise, Holmstad, Rune, Hasan, Rumina, Shakoor, Sadia, Rojas, Maria Luz Zamudio, Wasyl, Dariusz, Bosevska, Golubinka, Kochubovski, Mihail, Radu, Cojocaru, Gassama†, Amy, Radosavljevic, Vladimir, Tay, Moon Y.F., Zuniga-Montanez, Rogelio, Wuertz, Stefan, Gavačová, Dagmar, Trkov, Marija, Keddy, Karen, Esterhuyse, Kerneels, Cerdà-Cuéllar, Marta, Pathirage, Sujatha, Larsson, D. G.Joakim, Norrgren, Leif, Örn, Stefan, Van der Heijden, Tanja, Kumburu, Happiness Houka, de RodaHusman, Ana Maria, Njanpop-Lafourcade, Berthe Marie, Bidjada, Pawou, Nikiema-Pessinaba, Somtinda Christelle, Levent, Belkis, Meschke, John Scott, Beck, Nicola Koren, Van Dang, Chinh, Tran, Doan Minh Nguyen, Do Phuc, Nguyen, Kwenda, Geoffrey, Munk, Patrick, Venkatakrishnan, Shweta, Aarestrup, Frank M., Cotten, Matthew, Koopmans, Marion P.G., IRAS OH Epidemiology Microbial Agents, dIRAS RA-I&I I&I

Publikováno v: Scientific Reports
Scientific Reports, 10(1), 1. NLM (Medline)
IRTA Pubpro. Open Digital Archive
Institut de Recerca i Tecnologia Agroalimentàries (IRTA)
Scientific Reports, 10(1)
Nieuwenhuijse, D F, Oude Munnink, B B, Phan, M V T, Hendriksen, R S, Bego, A, Rees, C, Neilson, E H, Coventry, K, Collignon, P, Allerberger, F, Rahube, T O, Oliveira, G, Ivanov, I, Sopheak, T, Vuthy, Y, Yost, C K, Tabo, D A, Cuadros-Orellana, S, Ke, C, Zheng, H, Baisheng, L, Jiao, X, Donado-Godoy, P, Coulibaly, K J, Hrenovic, J, Jergović, M, Karpíšková, R, Elsborg, B, Legesse, M, Eguale, T, Heikinheimo, A, Villacis, J E, Sanneh, B, Malania, L, Nitsche, A, Brinkmann, A, Saba, C K S, Kocsis, B, Solymosi, N, Thorsteinsdottir, T R, Hatha, A M, Alebouyeh, M, Morris, D, O’Connor, L, Cormican, M, Moran-Gilad, J, Battisti, A, Alba, P, Shakenova, Z, Kiiyukia, C & the Global Sewage Surveillance project consortium 2020, ' Setting a baseline for global urban virome surveillance in sewage ', Scientific Reports, vol. 10, 13748 . https://doi.org/10.1038/s41598-020-69869-0
Scientific Reports 10 (2020) 1
Nieuwenhuijse, D F, Oude Munnink, B B, Phan, M V T, the Global Sewage Surveillance project consortium, Munk, P, Venkatakrishnan, S, Aarestrup, F M, Cotten, M & P. G. Koopmans, M 2020, ' Setting a baseline for global urban virome surveillance in sewage ', Scientific Reports, vol. 10, no. 1, 13748 . https://doi.org/10.1038/s41598-020-69869-0
Scientific Reports, 10(1):13748. Nature Publishing Group
Scientific Reports, Vol 10, Iss 1, Pp 1-13 (2020)

The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aba36ce8764e0bc13f49a1fb8e36bea7
https://hdl.handle.net/11250/2775157

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