An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.

Autor: Keasar C; Department of Computer Science, Ben Gurion University of the Negev, Be'er sheva, Israel., McGuffin LJ; Biomedical Sciences Division, School of Biological Sciences, University of Reading, Reading, RG6 6AS, UK., Wallner B; Division of Bioinformatics, Department of Physics, Chemistry, and Biology, Linköping University, Linköping, Sweden., Chopra G; Department of Chemistry, College of Science, Purdue University, West Lafayette, IN, USA.; Purdue Institute for Drug Discovery, Purdue University, West Lafayette, IN, USA.; Purdue Center for Cancer Research, Purdue University, West Lafayette, IN, USA.; Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University, West Lafayette, IN, USA.; Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, IN, USA., Adhikari B; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Bhattacharya D; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA.; Department of Computer Science and Software Engineering, Auburn University, Auburn, AL, USA., Blake L; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Bortot LO; Laboratory of Biological Physics, Faculty of Pharmaceutical Sciences at Ribeirão Preto, University of São Paulo, São Paulo, Brazil., Cao R; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Dhanasekaran BK; Molecular Biophysics Unit and IISC Mathematics Initiative, Indian Institute of Science, Bangalore, India., Dimas I; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Faccioli RA; Institute of Mathematical and Computer Sciences, University of São Paulo, São Paulo, Brazil., Faraggi E; Research and Information Systems, LLC, Carmel, IN, USA.; Department of Biochemistry and Molecular Biology, IU School of Medicine, Indianapolis, IN, USA.; Batelle Center for Mathematical Medicine, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA., Ganzynkowicz R; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Ghosh S; Molecular Biophysics Unit and IISC Mathematics Initiative, Indian Institute of Science, Bangalore, India., Ghosh S; Molecular Biophysics Unit and IISC Mathematics Initiative, Indian Institute of Science, Bangalore, India., Giełdoń A; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Golon L; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., He Y; School of Engineering, University of California, Merced, CA, USA., Heo L; Department of Chemistry, Seoul National University, Seoul, Republic of Korea., Hou J; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Khan M; Department of Computer and Information Science, University of Massachusetts Dartmouth, MA, USA., Khatib F; Department of Computer and Information Science, University of Massachusetts Dartmouth, MA, USA., Khoury GA; Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA., Kieslich C; Texas A&M Energy Institute, Texas A&M University, College Station, TX, USA., Kim DE; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Krupa P; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Lee GR; Department of Chemistry, Seoul National University, Seoul, Republic of Korea., Li H; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA.; School of Computer Science and Information Technology, NorthEast Normal University, Changchun, China.; Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA., Li J; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Lipska A; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Liwo A; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Maghrabi AHA; Biomedical Sciences Division, School of Biological Sciences, University of Reading, Reading, RG6 6AS, UK., Mirdita M; Max Planck Institute for Biophysical Chemistry, Göttingen, Germany., Mirzaei S; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; California State Polytechnic University, Pomona, CA, USA., Mozolewska MA; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Onel M; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX, USA., Ovchinnikov S; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Institute for Protein Design, University of Washington, Seattle, WA, USA., Shah A; Department of Computer and Information Science, University of Massachusetts Dartmouth, MA, USA., Shah U; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX, USA., Sidi T; Department of Computer Science, Ben Gurion University of the Negev, Be'er sheva, Israel., Sieradzan AK; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Ślusarz M; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Ślusarz R; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Smadbeck J; Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ, USA., Tamamis P; Texas A&M Energy Institute, Texas A&M University, College Station, TX, USA.; Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX, USA., Trieber N; Department of Computer and Information Science, University of Massachusetts Dartmouth, MA, USA., Wirecki T; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Yin Y; Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA., Zhang Y; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA., Bacardit J; Interdisciplinary Computing and Complex BioSystems (ICOS) research group, School of Computing, Newcastle University, Newcastle-upon-Tyne, UK., Baranowski M; Intercollegiate Faculty of Biotechnology, University of Gdańsk and Medical University of Gdańsk, Gdańsk, Poland., Chapman N; Center for Game Science, Department of Computer Science & Engineering, University of Washington, Seattle, WA, USA., Cooper S; College of Computer and Information Science, Northeastern University, Boston, MA, USA., Defelicibus A; Institute of Mathematical and Computer Sciences, University of São Paulo, São Paulo, Brazil., Flatten J; Center for Game Science, Department of Computer Science & Engineering, University of Washington, Seattle, WA, USA., Koepnick B; Department of Biochemistry, University of Washington, Seattle, WA, USA., Popović Z; Center for Game Science, Department of Computer Science & Engineering, University of Washington, Seattle, WA, USA., Zaborowski B; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Baker D; Department of Biochemistry, University of Washington, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.; Center for Game Science, Department of Computer Science & Engineering, University of Washington, Seattle, WA, USA., Cheng J; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Czaplewski C; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Delbem ACB; Institute of Mathematical and Computer Sciences, University of São Paulo, São Paulo, Brazil., Floudas C; Texas A&M Energy Institute, Texas A&M University, College Station, TX, USA., Kloczkowski A; Faculty of Chemistry, University of Gdansk, Gdańsk, Poland., Ołdziej S; Intercollegiate Faculty of Biotechnology, University of Gdańsk and Medical University of Gdańsk, Gdańsk, Poland., Levitt M; Department of Structural Biology, School of Medicine, Stanford University, Stanford, CA, USA., Scheraga H; Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA., Seok C; Department of Chemistry, Seoul National University, Seoul, Republic of Korea., Söding J; Max Planck Institute for Biophysical Chemistry, Göttingen, Germany., Vishveshwara S; Molecular Biophysics Unit and IISC Mathematics Initiative, Indian Institute of Science, Bangalore, India., Xu D; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA.; Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA., Crivelli SN; Lawrence Berkeley National Laboratory, Berkeley, CA, USA. SNCrivelli@lbl.gov.; Department of Computer Science, University of California, Davis, CA, USA. SNCrivelli@lbl.gov.

Publikováno v: Scientific reports [Sci Rep] 2018 Jul 02; Vol. 8 (1), pp. 9939. Date of Electronic Publication: 2018 Jul 02.