Transcriptional activity, chromosomal distribution and expression effects of transposable elements in Coffea genomes.

Autor: Fabrício R Lopes, Daudi Jjingo, Carlos R M da Silva, Alan C Andrade, Pierre Marraccini, João B Teixeira, Marcelo F Carazzolle, Gonçalo A G Pereira, Luiz Filipe P Pereira, André L L Vanzela, Lu Wang, I King Jordan, Claudia M A Carareto

Publikováno v: PLoS ONE, Vol 8, Iss 11, p e78931 (2013)

Plant genomes are massively invaded by transposable elements (TEs), many of which are located near host genes and can thus impact gene expression. In flowering plants, TE expression can be activated (de-repressed) under certain stressful conditions,

Externí odkaz: https://doaj.org/article/2d049ba9569f40559af4cd18a122a187

FISH using a gag-like fragment probe reveals a common Ty3-gypsy-like retrotransposon in genome of Coffea species

Autor: Claudia M. A. Carareto, Luiz Filipe Protasio Pereira, Laurival Antonio Vilas-Boas, Fabrício R. Lopes, André Luís Laforga Vanzela, T. Sera, Priscila Mary Yuyama, Tiago Benedito dos Santos

Publikováno v: Genome. 55(12)

The genus Coffea possesses about 100 species, and the most economically important are Coffea canephora and Coffea arabica. The latter is predominantly self-compatible with 2n = 4x = 44, while the others of the genus are diploid with 2n = 2x = 22 and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e6c1b08739f82223da190ea868c316cb
https://pubmed.ncbi.nlm.nih.gov/23231601

The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes

Autor: Adriana Granzotto, Emmanuelle Lerat, Claudia M. A. Carareto, Fabrício R. Lopes, Cristina Vieira

Publikováno v: Web of Science
Repositório Institucional da UNESP
Universidade Estadual Paulista (UNESP)
instacron:UNESP
BMC Evolutionary Biology
BMC Evolutionary Biology, 2009, 9, pp.174. ⟨10.1186/1471-2148-9-174⟩
BMC Evolutionary Biology, Vol 9, Iss 1, p 174 (2009)
BMC Evolutionary Biology, BioMed Central, 2009, 9, pp.174. ⟨10.1186/1471-2148-9-174⟩

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Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9873cb9fea2a0b1e1679e34b3fd720fb

The protist Trichomonas vaginalis harbors multiple lineages of transcriptionally active Mutator-like elements

Autor: Claudia M. A. Carareto, Marlene Benchimol, Fabrício R. Lopes, Joana C. Silva, Gustavo G.L. Costa, Gonçalo Amarante Guimarães Pereira

Publikováno v: BMC Genomics
BMC Genomics, Vol 10, Iss 1, p 330 (2009)
Web of Science
Repositório Institucional da UNESP
Universidade Estadual Paulista (UNESP)
instacron:UNESP

Background For three decades the Mutator system was thought to be exclusive of plants, until the first homolog representatives were characterized in fungi and in early-diverging amoebas earlier in this decade. Results Here, we describe and characteri

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f695e8ca3fc32f5ad9b77e128dbe8dc
http://europepmc.org/articles/PMC2725143