Characterizing the interplay between gene nucleotide composition bias and splicing

Autor: Sébastien Lemaire, Nicolas Fontrodona, Fabien Aubé, Jean-Baptiste Claude, Hélène Polvèche, Laurent Modolo, Cyril F. Bourgeois, Franck Mortreux, Didier Auboeuf

Publikováno v: Genome Biology, Vol 20, Iss 1, Pp 1-21 (2019)

Abstract Background Nucleotide composition bias plays an important role in the 1D and 3D organization of the human genome. Here, we investigate the potential interplay between nucleotide composition bias and the regulation of exon recognition during

Externí odkaz: https://doaj.org/article/5a5d20b3977c4af3acdd667e1f6ebabc

The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis

Autor: Fabien Chardon, Gwendal Cueff, Etienne Delannoy, Fabien Aubé, Aurélia Lornac, Magali Bedu, Françoise Gilard, Stéphanie Pateyron, Hélène Rogniaux, Audrey Gargaros, Hakim Mireau, Loïc Rajjou, Marie-Laure Martin-Magniette, Françoise Budar

Publikováno v: Plants, Vol 9, Iss 5, p 573 (2020)

Mitochondria and chloroplasts are important actors in the plant nutritional efficiency. So, it could be expected that a disruption of the coadaptation between nuclear and organellar genomes impact plant response to nutrient stresses. We addressed thi

Externí odkaz: https://doaj.org/article/2aa9d94c85414131b0c800f509a770ad

Interplay between gene nucleotide composition bias and splicing

Autor: Cyril F. Bourgeois, Fabien Aubé, Sébastien Lemaire, Franck Mortreux, Nicolas Fontrodona, Didier Auboeuf, Hélène Polvèche, Jean-Baptiste Claude, Laurent Modolo

To characterize the rules governing exon recognition during splicing, we analysed dozens of RNA-seq datasets and identified ~3,200 GC-rich exons and ~4,000 AT-rich exons whose inclusion depends on different sets of splicing factors. We show that GC-r

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::faac5542644911802d617b220f39f533
https://doi.org/10.1101/605832

Three new pentatricopeptide repeat proteins facilitate the splicing of mitochondrial transcripts and complex I biogenesis in Arabidopsis

Autor: Céline Dargel-Graffin, Fabien Aubé, Hakim Mireau, Chuande Wang, Martine Quadrado

Publikováno v: Journal of Experimental Botany 21 (69), 5131-5140. (2018)
Journal of Experimental Botany
Journal of Experimental Botany, Oxford University Press (OUP), 2018, 69 (21), pp.5131-5140. ⟨10.1093/jxb/ery275⟩

Three nuclear encoded multi-functional pentatricopeptide repeat proteins localizing in the mitochondrion are involved in splicing of a cohort of mitochondrial group II introns and thereby required for complex I biogenesis.
Group II introns are c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f65381dfb07f1e09e8b04fcfe4458c03
http://prodinra.inra.fr/record/458692

Data quality control considerations in multivariate environmental monitoring: experience of the French coastal network SOMLIT

Autor: Elsa Breton, Nicolas Savoye, Peggy Rimmelin-Maury, Benoit Sautour, Eric Goberville, Arnaud Lheureux, Thierry Cariou, Sophie Ferreira, Hélène Agogué, Samir Alliouane, Fabien Aubert, Sébastien Aubin, Eric Berthebaud, Hadrien Blayac, Lucie Blondel, Cédric Boulart, Yann Bozec, Sarah Bureau, Arnaud Caillo, Arnaud Cauvin, Jean-Baptiste Cazes, Léo Chasselin, Pascal Claquin, Pascal Conan, Marie-Ange Cordier, Laurence Costes, Romain Crec’hriou, Olivier Crispi, Muriel Crouvoisier, Valérie David, Yolanda Del Amo, Hortense De Lary, Gaspard Delebecq, Jeremy Devesa, Aurélien Domeau, Maria Durozier, Claire Emery, Eric Feunteun, Juliette Fauchot, Valérie Gentilhomme, Sandrine Geslin, Mélanie Giraud, Karine Grangeré, Gerald Grégori, Emilie Grossteffan, Aurore Gueux, Julien Guillaudeau, Gael Guillou, Manon Harrewyn, Orianne Jolly, Florence Jude-Lemeilleur, Paul Labatut, Nathalie Labourdette, Nicolas Lachaussée, Michel Lafont, Veronique Lagadec, Christophe Lambert, Jezebel Lamoureux, Laurent Lanceleur, Benoit Lebreton, Eric Lecuyer, David Lemeille, Yann Leredde, Cédric Leroux, Aude Leynaert, Stéphane L’Helguen, Camilla Liénart, Eric Macé, Eric Maria, Barbara Marie, Dominique Marie, Sébastien Mas, Fabrice Mendes, Line Mornet, Behzad Mostajir, Laure Mousseau, Antoine Nowaczyk, Sandra Nunige, René Parra, Thomas Paulin, David Pecqueur, Franck Petit, Philippe Pineau, Patrick Raimbault, Fabienne Rigaut-Jalabert, Christophe Salmeron, Ian Salter, Pierre-Guy Sauriau, Laurent Seuront, Emmanuelle Sultan, Rémi Valdès, Vincent Vantrepotte, Francesca Vidussi, Florian Voron, Renaud Vuillemin, Laurent. Zudaire, Nicole Garcia

Publikováno v: Frontiers in Marine Science, Vol 10 (2023)

IntroductionWhile crucial to ensuring the production of accurate and high-quality data—and to avoid erroneous conclusions—data quality control (QC) in environmental monitoring datasets is still poorly documented.MethodsWith a focus on annual inte

Externí odkaz: https://doaj.org/article/bccfad75e55247ff95e0666db9c72da8