Zobrazeno 1 - 10
of 115
pro vyhledávání: '"F Alex Feltus"'
Publikováno v:
Bioinformatics and Biology Insights, Vol 13 (2019)
Motivation: As the size of high-throughput DNA sequence datasets continues to grow, the cost of transferring and storing the datasets may prevent their processing in all but the largest data centers or commercial cloud providers. To lower this cost,
Externí odkaz:
https://doaj.org/article/d4a6191728224797942e80159921fac7
Autor:
Benafsh Husain, F Alex Feltus
Publikováno v:
PLoS ONE, Vol 14, Iss 8, p e0220279 (2019)
Gene co-expression networks (GCNs) are constructed from Gene Expression Matrices (GEMs) in a bottom up approach where all gene pairs are tested for correlation within the context of the input sample set. This approach is computationally intensive for
Externí odkaz:
https://doaj.org/article/03dcd1dfd0c040ebb5b9c9f4b205bab4
Autor:
Kimberly Roche, F Alex Feltus, Jang Pyo Park, Marie-May Coissieux, Chenyan Chang, Vera B S Chan, Mohamed Bentires-Alj, Brian W Booth
Publikováno v:
PLoS ONE, Vol 12, Iss 6, p e0179265 (2017)
Introducing tumor-derived cells into normal mammary stem cell niches at a sufficiently high ratio of normal to tumorous cells causes those tumor cells to undergo a change to normal mammary phenotype and yield normal mammary progeny. This phenomenon h
Externí odkaz:
https://doaj.org/article/da062a5f92d94f1086f2f26275b37f2b
Publikováno v:
PLoS ONE, Vol 11, Iss 5, p e0155637 (2016)
Different modes of gene duplication including whole-genome duplication (WGD), and tandem, proximal and dispersed duplications are widespread in angiosperm genomes. Small-scale, stochastic gene relocations and transposed gene duplications are widely a
Externí odkaz:
https://doaj.org/article/f3e56ebbed6b441f865052ce84004c68
Autor:
Elise Schnabel, Jacklyn Thomas, Rabia El-Hawaz, Yueyao Gao, William L. Poehlman, Suchitra Chavan, Asher Pasha, Eddi Esteban, Nicholas Provart, F. Alex Feltus, Julia Frugoli
Publikováno v:
Molecular Plant-Microbe Interactions, Vol 36, Iss 12, Pp 805-820 (2023)
We report a public resource for examining the spatiotemporal RNA expression of 54,893 Medicago truncatula genes during the first 72 h of response to rhizobial inoculation. Using a methodology that allows synchronous inoculation and growth of more tha
Externí odkaz:
https://doaj.org/article/035b2791dc064eabb1d63506c24d1022
Publikováno v:
PLoS ONE, Vol 7, Iss 9, p e45041 (2012)
Complex traits and other polygenic processes require coordinated gene expression. Co-expression networks model mRNA co-expression: the product of gene regulatory networks. To identify regulatory mechanisms underlying coordinated gene expression in a
Externí odkaz:
https://doaj.org/article/cbf831013cb44e6b89d19e8757b96233
Autor:
Yupeng Wang, Xiyin Wang, Haibao Tang, Xu Tan, Stephen P Ficklin, F Alex Feltus, Andrew H Paterson
Publikováno v:
PLoS ONE, Vol 6, Iss 12, p e28150 (2011)
BACKGROUND: Both single gene and whole genome duplications (WGD) have recurred in angiosperm evolution. However, the evolutionary effects of different modes of gene duplication, especially regarding their contributions to genetic novelty or redundanc
Externí odkaz:
https://doaj.org/article/f7e2daeff8df4e07ae4ed5913e541de7
Autor:
Cemal Erdem, Arnab Mutsuddy, Ethan M. Bensman, William B. Dodd, Michael M. Saint-Antoine, Mehdi Bouhaddou, Robert C. Blake, Sean M. Gross, Laura M. Heiser, F. Alex Feltus, Marc R. Birtwistle
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-18 (2022)
Mechanistic models of how single cells respond to different perturbations can help integrate disparate big data sets or predict response to varied drug combinations. Here the authors develop a scalable, open-source pipeline for constructing and simul
Externí odkaz:
https://doaj.org/article/9dad06976e8041ddad56165aa260f460
Autor:
Elise Schnabel, Jacklyn Thomas, Rabia El-Hawaz, Yueyao Gao, William Poehlman, Suchitra Chavan, Asher Pasha, Eddi Esteban, Nicholas Provart, F. Alex Feltus, Julia Frugoli
We report a public resource for examining the spatiotemporal RNA expression of 54,893M. truncatulagenes during the first 72 hours of response to rhizobial inoculation. Using a methodology that allows synchronous inoculation and growth of over 100 pla
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::dcd6e463daa1f83675533f01dda6d169
https://doi.org/10.1101/2023.03.14.532650
https://doi.org/10.1101/2023.03.14.532650
Autor:
Elise L. Schnabel, Suchitra A. Chavan, Yueyao Gao, William L. Poehlman, F. Alex Feltus, Julia A. Frugoli
Nodule number regulation in legumes is controlled by a feedback loop that integrates nutrient and rhizobia symbiont status signals to regulate nodule development. Signals from the roots are perceived by shoot receptors, including a CLV1-like receptor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4982f8b1374155fd8a9d7de65c60c5dc
https://doi.org/10.1101/2023.01.19.524769
https://doi.org/10.1101/2023.01.19.524769