Rubisco packaging and stoichiometric composition of a native β-carboxysome.

Autor: Sun Y; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, United Kingdom., Sheng Y; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Ni T; Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, United Kingdom., Ge X; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, United Kingdom., Sarsby J; Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Crown Street, L69 7ZB, Liverpool, United Kingdom., Brownridge PJ; Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Crown Street, L69 7ZB, Liverpool, United Kingdom., Li K; College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao 266003, China., Hardenbrook N; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom., Dykes GF; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, United Kingdom., Rockliffe N; GeneMill, University of Liverpool, Faculty of Health & Life Sciences, University of Liverpool, Crown Street, L69 7ZB, Liverpool, United Kingdom., Eyers CE; Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Crown Street, L69 7ZB, Liverpool, United Kingdom., Zhang P; Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.; Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, United Kingdom.; Chinese Academy of Medical Sciences Oxford Institute, University of Oxford, Oxford, OX3 7BN, United Kingdom., Liu LN; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, United Kingdom.; College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao 266003, China.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Sep 21. Date of Electronic Publication: 2024 Sep 21.

Redox Regulation of Brain Selective Kinases BRSK1/2: Implications for Dynamic Control of the Eukaryotic AMPK family through Cys-based mechanisms.

Autor: Bendzunas GN; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA., Byrne DP; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Shrestha S; Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA., Daly LA; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.; Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Oswald SO; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.; Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Katiyar S; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA., Venkat A; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA., Yeung W; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.; Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA., Eyers CE; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.; Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Eyers PA; Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA., Kannan N; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Apr 10. Date of Electronic Publication: 2024 Apr 10.

Mass Spectrometric Analysis of the Active Site Tryptic Peptide of Recombinant O ⁶ -Methylguanine-DNA Methyltransferase Following Incubation with Human Colorectal DNA Reveals the Presence of an O ⁶ -Alkylguanine Adductome.

Autor: Abdelhady R; Epidemiology and Public Health Group, Division of Population Health, Health Services Research and Primary Care, School of Health Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PL, U.K., Senthong P; Epidemiology and Public Health Group, Division of Population Health, Health Services Research and Primary Care, School of Health Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PL, U.K., Eyers CE; Department of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, U.K., Reamtong O; Department of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, U.K., Cowley E; Epidemiology and Public Health Group, Division of Population Health, Health Services Research and Primary Care, School of Health Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PL, U.K., Cannizzaro L; Department of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, U.K., Stimpson J; Department of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, U.K., Cain K; Department of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, U.K., Wilkinson OJ; Centre for Chemical Biology, Department of Chemistry, Sheffield Institute for Nucleic Acids, University of Sheffield, Sheffield S3 7HF, U.K., Williams NH; Centre for Chemical Biology, Department of Chemistry, Sheffield Institute for Nucleic Acids, University of Sheffield, Sheffield S3 7HF, U.K., Barran PE; Department of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, U.K., Margison GP; Epidemiology and Public Health Group, Division of Population Health, Health Services Research and Primary Care, School of Health Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PL, U.K., Williams DM; Centre for Chemical Biology, Department of Chemistry, Sheffield Institute for Nucleic Acids, University of Sheffield, Sheffield S3 7HF, U.K., Povey AC; Epidemiology and Public Health Group, Division of Population Health, Health Services Research and Primary Care, School of Health Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PL, U.K.

Publikováno v: Chemical research in toxicology [Chem Res Toxicol] 2023 Dec 18; Vol. 36 (12), pp. 1921-1929. Date of Electronic Publication: 2023 Nov 20.

Custom Workflow for the Confident Identification of Sulfotyrosine-Containing Peptides and Their Discrimination from Phosphopeptides.

Autor: Daly LA; Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K.; Department of Biochemistry, Cell & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K., Byrne DP; Department of Biochemistry, Cell & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K., Perkins S; Computational Biology Facility, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K., Brownridge PJ; Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K., McDonnell E; Department of Biochemistry, Cell & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K.; Computational Biology Facility, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K., Jones AR; Department of Biochemistry, Cell & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K.; Computational Biology Facility, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K., Eyers PA; Department of Biochemistry, Cell & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K., Eyers CE; Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K.; Department of Biochemistry, Cell & Systems Biology, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, U.K.

Publikováno v: Journal of proteome research [J Proteome Res] 2023 Dec 01; Vol. 22 (12), pp. 3754-3772. Date of Electronic Publication: 2023 Nov 08.

Mechanistic and evolutionary insights into isoform-specific 'supercharging' in DCLK family kinases.

Autor: Venkat A; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, United States., Watterson G; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, United States., Byrne DP; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom., O'Boyle B; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, United States., Shrestha S; Institute of Bioinformatics, University of Georgia, Athens, United States., Gravel N; Institute of Bioinformatics, University of Georgia, Athens, United States., Fairweather EE; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom., Daly LA; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom.; Centre for Proteome Research, Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom., Bunn C; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, United States., Yeung W; Institute of Bioinformatics, University of Georgia, Athens, United States., Aggarwal I; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, United States., Katiyar S; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, United States., Eyers CE; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom.; Centre for Proteome Research, Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom., Eyers PA; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom., Kannan N; Institute of Bioinformatics, University of Georgia, Athens, United States.

Publikováno v: ELife [Elife] 2023 Oct 26; Vol. 12. Date of Electronic Publication: 2023 Oct 26.