Protein disorder reduced in Saccharomyces cerevisiae to survive heat shock [version 1; referees: 2 approved, 1 approved with reservations]

Autor: Esmeralda Vicedo, Zofia Gasik, Yu-An Dong, Tatyana Goldberg, Burkhard Rost

Publikováno v: F1000Research, Vol 4 (2015)

Recent experiments established that a culture of Saccharomyces cerevisiae (baker’s yeast) survives sudden high temperatures by specifically duplicating the entire chromosome III and two chromosomal fragments (from IV and XII). Heat shock proteins (

Externí odkaz: https://doaj.org/article/f70ec7c4ec944e66b856a040a483be20

Protein disorder—a breakthrough invention of evolution?

Autor: Markus Schmidberger, Marco Punta, Esmeralda Vicedo, Christian Schaefer, Burkhard Rost, Avner Schlessinger

Publikováno v: Current Opinion in Structural Biology. 21:412-418

As an operational definition, we refer to regions in proteins that do not adopt regular three-dimensional structures in isolation, as disordered regions. An antipode to disorder would be 'well-structured' rather than 'ordered'. Here, we argue for the

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d70591cc9682884e0a27b874f3f5396
https://doi.org/10.1016/j.sbi.2011.03.014

Highlights from the Third European International Society for Computational Biology (ISCB) Student Council Symposium 2014

Autor: Margherita Francescatto, Esmeralda Vicedo, Sepideh Babaei, Susanne M. A. Hermans, Alexandre Borrel, Pieter Meysman

Publikováno v: BMC Bioinformatics, 16 (suppl 3), 2015
BMC Bioinformatics
BMC bioinformatics 16(Suppl 3), A1 (2015). doi:10.1186/1471-2105-16-S3-A1
3rd International Society for Computational Biology (ISCB) European Student Council Symposium 2014, ISCB, Strasbourg, France, 2014-09-06-2014-09-06

In this meeting report, we give an overview of the talks, presentations and posters presented at the third European Symposium of the International Society for Computational Biology (ISCB) Student Council. The event was organized as a satellite meetin

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::db3d5c652120447155607fb883549dd8
https://doi.org/10.1186/1471-2105-16-s3-a1

A large-scale evaluation of computational protein function prediction

Autor: Christine A. Orengo, Liang Lan, Daniel W. A. Buchan, Jeffrey M. Yunes, Alberto Paccanaro, Yannick Mahlich, Enrico Lavezzo, Patricia C. Babbitt, Domenico Cozzetto, Cedric Landerer, Jari Björne, Esmeralda Vicedo, Robert Rentzsch, Rajendra Joshi, Hagit Shatkay, Nives Škunca, Zheng Wang, Tal Ronnen Oron, Ingolf Sommer, Amos Marc Bairoch, Mark Heron, Panče Panov, Daisuke Kihara, Wyatt T. Clark, Michael J.E. Sternberg, Steven E. Brenner, Sašo Džeroski, Burkhard Rost, Christian Schaefer, Karin Verspoor, Harshal Inamdar, Tapio Salakoski, Meghana Chitale, Alfonso E. Romero, Julian Gough, Fran Supek, Olivier Lichtarge, Dominik Achten, Serkan Erdin, Michael Kiening, Petri Törönen, Avik Datta, Iddo Friedberg, Thomas A. Hopf, Liisa Holm, Rita Casadio, Asa Ben-Hur, Tatjana Braun, Sean D. Mooney, Marco Falda, Kiley Graim, Michal Linial, Alexandra M. Schnoes, Christopher S. Funk, Rebecca Kaßner, Patrik Koskinen, Nemanja Djuric, Paolo Fontana, Predrag Radivojac, Tobias Wittkop, Kevin Bryson, Maximilian Hecht, Susanna Repo, Haixuan Yang, Artem Sokolov, Prajwal Bhat, Tobias Hamp, Jianlin Cheng, Mark N. Wass, Gaurav Pandey, Michael L Souza, Damiano Piovesan, Ameet Talwalkar, Stefan Seemayer, Eric Venner, Sunitha K Manjari, Fanny Gatzmann, Aalt D. J. van Dijk, Manfred Roos, Tomislav Šmuc, David T. Jones, Peter Hönigschmid, Ariane Boehm, Florian Auer, Jussi Nokso-Koivisto, Stefano Toppo, Slobodan Vucetic, Denis Krompass, Qingtian Gong, Cajo J. F. ter Braak, Andrew Wong, Barbara Di Camillo, Yiannis A. I. Kourmpetis, Andreas Martin Lisewski, Matko Bošnjak, Bhakti Limaye, Weidong Tian, Yuhong Guo, Xinran Dong, Hai Fang, Yuanpeng Zhou, Stefanie Kaufmann

Publikováno v: Nature Methods
Nature methods
Nature Methods : techniques for life scientists and chemists 10 (2013)
Nature Methods : techniques for life scientists and chemists, 10, 221-227
Nature Methods, Vol. 10, No 3 (2013) pp. 221-7

Automated annotation of protein function is challenging. As the number of sequenced genomes rapidly grows, the overwhelming majority of protein products can only be annotated computationally. If computational predictions are to be relied upon, it is

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c19e166af084819ee544097527791f10
http://hdl.handle.net/10449/22010

Highlights from the ISCB Student Council Symposium 2013

Autor: Esmeralda Vicedo, Avinash Kumar Shanmugam, Cynthia Prudence, Anupama Jigisha, Tomás Di Domenico, Emre Guney

Publikováno v: BMC Bioinformatics

This report summarizes the scientific content and activities of the annual symposium organized by the Student Council of the International Society for Computational Biology (ISCB), held in conjunction with the Intelligent Systems for Molecular Biolog

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::acad5dd4a0ac22a429ebf004e2c5519d
http://europepmc.org/articles/PMC4079984