Zobrazeno 1 - 10
of 158
pro vyhledávání: '"Errol Strain"'
Autor:
Andrea Ottesen, Brandon Kocurek, Elizabeth Reed, Seth Commichaux, Mark Mammel, Padmini Ramachandran, Patrick McDermott, Brenna M. Flannery, Errol Strain
Publikováno v:
Frontiers in Veterinary Science, Vol 11 (2024)
IntroductionIdentification of chemical toxins from complex or highly processed foods can present ‘needle in the haystack’ challenges for chemists. Metagenomic data can be used to guide chemical toxicity evaluations by providing DNA-based descript
Externí odkaz:
https://doaj.org/article/5dfca797a2364a2a8a41df68b0fbcd65
Publikováno v:
Communications Biology, Vol 6, Iss 1, Pp 1-12 (2023)
Abstract Antimicrobial resistance (AMR) monitoring for public health is relying more on whole genome sequencing to characterize and compare resistant strains. This requires new approaches to describe and track AMR that take full advantage of the deta
Externí odkaz:
https://doaj.org/article/ed4b5d7c214641209f445b310c5e8612
Autor:
Brandon Kocurek, Padmini Ramachandran, Christopher J. Grim, Paul Morin, Laura Howard, Andrea Ottesen, Ruth Timme, Susan R. Leonard, Hugh Rand, Errol Strain, Daniel Tadesse, James B. Pettengill, David W. Lacher, Mark Mammel, Karen G. Jarvis
Publikováno v:
Microbiology Spectrum, Vol 11, Iss 6 (2023)
ABSTRACT Microorganisms frequently colonize surfaces within food production facilities. Detection of Listeria monocytogenes in this setting relies on culture-dependent methods, but the complex dynamics of bacterial interactions within these environme
Externí odkaz:
https://doaj.org/article/d4fc7befa20f47f9a6760501eb89998b
Autor:
Carla L. Schwan, Leonardo M. Bastos, Shenia Young, Kelly Domesle, Beilei Ge, Chih-Hao Hsu, Cong Li, Errol Strain, Jessie Vipham, Cassandra Jones, Raghavendra Amachawadi, Tiruvoor G. Nagaraja, Valentina Trinetta
Publikováno v:
Journal of Food Protection, Vol 86, Iss 8, Pp 100113- (2023)
Antimicrobials and heavy metals are commonly used in the animal feed industry. The role of in-feed antimicrobials on the evolution and persistence of resistance in enteric bacteria is not well described. Whole-Genome Sequencing (WGS) is widely used f
Externí odkaz:
https://doaj.org/article/56c720c8347c45fdaba475f40e7a21a7
Autor:
Guojie Cao, Shaohua Zhao, Dai Kuang, Chih-Hao Hsu, Lanlan Yin, Yan Luo, Zhao Chen, Xuebin Xu, Errol Strain, Patrick McDermott, Marc Allard, Eric Brown, Jianghong Meng, Jie Zheng
Publikováno v:
Scientific Reports, Vol 13, Iss 1, Pp 1-13 (2023)
Abstract Multidrug-resistant (MDR) Salmonella has been a long-standing challenge in public health and food safety. The prevalence of MDR S. Enteritidis, especially isolated from humans, in China is significantly higher than those from the U.S. and ot
Externí odkaz:
https://doaj.org/article/6d61134f0e2845ec9f96ff80294354d1
Autor:
Seth Commichaux, Kiran Javkar, Padmini Ramachandran, Niranjan Nagarajan, Denis Bertrand, Yi Chen, Elizabeth Reed, Narjol Gonzalez-Escalona, Errol Strain, Hugh Rand, Mihai Pop, Andrea Ottesen
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-18 (2021)
Abstract Background Whole genome sequencing of cultured pathogens is the state of the art public health response for the bioinformatic source tracking of illness outbreaks. Quasimetagenomics can substantially reduce the amount of culturing needed bef
Externí odkaz:
https://doaj.org/article/5f6f85a22255402194931f23989f488c
Autor:
Heather Tate, Sherry Ayers, Epiphanie Nyirabahizi, Cong Li, Stacey Borenstein, Shenia Young, Crystal Rice-Trujillo, Sanchez Saint Fleurant, Sonya Bodeis-Jones, Xunde Li, Melissa Tobin-D’Angelo, Victoriya Volkova, Rachel Hardy, Lisa Mingle, Nkuchia M. M’ikanatha, Laura Ruesch, Chris A. Whitehouse, Gregory H. Tyson, Errol Strain, Patrick F. McDermott
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
In 2019, the United States National Antimicrobial Resistance Monitoring System (NARMS) surveyed raw salmon, shrimp, and tilapia from retail grocery outlets in eight states to assess the prevalence of bacterial contamination and antimicrobial resistan
Externí odkaz:
https://doaj.org/article/c1c4cf62542e4bdd99569d1abab4b4d1
Autor:
Jayanthi Gangiredla, Hugh Rand, Daniel Benisatto, Justin Payne, Charles Strittmatter, Jimmy Sanders, William J. Wolfgang, Kevin Libuit, James B. Herrick, Melanie Prarat, Magaly Toro, Thomas Farrell, Errol Strain
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-11 (2021)
Abstract Background Processing and analyzing whole genome sequencing (WGS) is computationally intense: a single Illumina MiSeq WGS run produces ~ 1 million 250-base-pair reads for each of 24 samples. This poses significant obstacles for smaller labor
Externí odkaz:
https://doaj.org/article/3918a4b98355463fad4187448142fe12
Autor:
Ruth E. Timme, William J. Wolfgang, Maria Balkey, Sai Laxmi Gubbala Venkata, Robyn Randolph, Marc Allard, Errol Strain
Publikováno v:
One Health Outlook, Vol 2, Iss 1, Pp 1-11 (2020)
Abstract The holistic approach of One Health, which sees human, animal, plant, and environmental health as a unit, rather than discrete parts, requires not only interdisciplinary cooperation, but standardized methods for communicating and archiving d
Externí odkaz:
https://doaj.org/article/1e526af787204d18b36d8f9c379f7fae
Autor:
Jorge Villacrés-Vallejo, José Aranda-Ventura, Anna Wallis, Robin Cagle, Sara M. Handy, Jeffery Davis, Elizabeth Reed, Shu Zhang, Errol Strain, Monica Pava-Ripoll, David Erickson, Padmini Ramachandran, Andrea Ottesen
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-9 (2020)
Abstract Background Full chloroplast genomes provide high resolution taxonomic discrimination between closely related plant species and are quickly replacing single and multi-locus barcoding regions as reference materials of choice for DNA based taxo
Externí odkaz:
https://doaj.org/article/fa9990f7b98a4be082a16aa94ca961c4