High-level Relatedness among Mycobacterium abscessus subsp. massiliense Strains from Widely Separated Outbreaks

Autor: Hervé Tettelin, Rebecca M. Davidson, Sonia Agrawal, Moira L. Aitken, Shamira Shallom, Nabeeh A. Hasan, Michael Strong, Vinicius Calado Nogueira de Moura, Mary Ann De Groote, Rafael S. Duarte, Erin Hine, Sushma Parankush, Qi Su, Sean C. Daugherty, Claire M. Fraser, Barbara A. Brown-Elliott, Richard J. Wallace, Steven M. Holland, Elizabeth P. Sampaio, Kenneth N. Olivier, Mary Jackson, Adrian M. Zelazny

Publikováno v: Emerging Infectious Diseases, Vol 20, Iss 3, Pp 364-371 (2014)

Three recently sequenced strains isolated from patients during an outbreak of Mycobacterium abscessus subsp. massiliense infections at a cystic fibrosis center in the United States were compared with 6 strains from an outbreak at a cystic fibrosis ce

Externí odkaz: https://doaj.org/article/9f7caa5aae804ca4b8c4dfb00f80a28e

Standardized metadata for human pathogen/vector genomic sequences.

Autor: Vivien G Dugan, Scott J Emrich, Gloria I Giraldo-Calderón, Omar S Harb, Ruchi M Newman, Brett E Pickett, Lynn M Schriml, Timothy B Stockwell, Christian J Stoeckert, Dan E Sullivan, Indresh Singh, Doyle V Ward, Alison Yao, Jie Zheng, Tanya Barrett, Bruce Birren, Lauren Brinkac, Vincent M Bruno, Elizabet Caler, Sinéad Chapman, Frank H Collins, Christina A Cuomo, Valentina Di Francesco, Scott Durkin, Mark Eppinger, Michael Feldgarden, Claire Fraser, W Florian Fricke, Maria Giovanni, Matthew R Henn, Erin Hine, Julie Dunning Hotopp, Ilene Karsch-Mizrachi, Jessica C Kissinger, Eun Mi Lee, Punam Mathur, Emmanuel F Mongodin, Cheryl I Murphy, Garry Myers, Daniel E Neafsey, Karen E Nelson, William C Nierman, Julia Puzak, David Rasko, David S Roos, Lisa Sadzewicz, Joana C Silva, Bruno Sobral, R Burke Squires, Rick L Stevens, Luke Tallon, Herve Tettelin, David Wentworth, Owen White, Rebecca Will, Jennifer Wortman, Yun Zhang, Richard H Scheuermann

Publikováno v: PLoS ONE, Vol 9, Iss 6, p e99979 (2014)

High throughput sequencing has accelerated the determination of genome sequences for thousands of human infectious disease pathogens and dozens of their vectors. The scale and scope of these data are enabling genotype-phenotype association studies to

Externí odkaz: https://doaj.org/article/7ea0c224c6f4484e9585bedb61a17966

Evolutionary dynamics of human rotaviruses: balancing reassortment with preferred genome constellations.

Autor: Sarah M McDonald, Jelle Matthijnssens, John K McAllen, Erin Hine, Larry Overton, Shiliang Wang, Philippe Lemey, Mark Zeller, Marc Van Ranst, David J Spiro, John T Patton

Publikováno v: PLoS Pathogens, Vol 5, Iss 10, p e1000634 (2009)

Group A human rotaviruses (RVs) are a major cause of severe gastroenteritis in infants and young children. Yet, aside from the genes encoding serotype antigens (VP7; G-type and VP4; P-type), little is known about the genetic make-up of emerging and e

Externí odkaz: https://doaj.org/article/d5aec715222b4bcebc78963bace2d224

Insights into the Musa genome: Syntenic relationships to rice and between Musa species

Autor: Olivier Garsmeur, Felipe Rodrigues da Silva, Georgios J. Pappas, Foo Cheung, Ang lique D'Hont, Christopher D. Town, Ryan Althoff, Manoel Souza, C. M. R. Santos, Tammy Arbogast, Catherine M. Ronning, Ana Y. Ciampi, Guillaume Blanc, Jim Leebens-Mack, Alberto Duarte Vilarinhos, Brian J. Haas, Pietro Piffanelli, Jean-Christophe Glaszmann, Magali Lescot, Manuel Ruiz, Robert N.G. Miller, Hiroyuki Kanamori, Takashi Matsumoto, Takuji Sasaki, Erin Hine

Publikováno v: BMC Genomics
BMC Genomics, BioMed Central, 2008, 9 (1), ⟨10.1186/1471-2164-9-58⟩
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA-Alice)
Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
BMC Genomics, 2008, 9 (1), ⟨10.1186/1471-2164-9-58⟩
BMC Genomics, 9, 1-20
BMC Genomics, Vol 9, Iss 1, p 58 (2008)
BMC Genomics 9 (2008)

Background Musa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff02163aa496f70cd8415ea1828317b3
https://doi.org/10.1186/1471-2164-9-58

Examination of the Enterotoxigenic Escherichia coli Population Structure during Human Infection

Autor: Nabilah Ibnat Baby, Alaullah Sheikh, Jeticia R. Sistrunk, James M. Fleckenstein, David A. Rasko, Erin Hine, Jason W. Sahl, Yasmin Ara Begum, Firdausi Qadri, Claire M. Fraser, Qingwei Luo

Publikováno v: mBio
mBio, Vol 6, Iss 3 (2015)

Enterotoxigenic E. coli (ETEC) can cause severe diarrhea and death in children in developing countries; however, bacterial diversity in natural infection is uncharacterized. In this study, we explored the natural population variation of ETEC from ind

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::74fd45155df70b529456b145b990ba22
http://europepmc.org/articles/PMC4462620