Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Erika Giste"'
Autor:
Licia Selleri, Thalia Papayannopoulou, Robert E. Thurman, Sandra Stehling-Sun, R. Scott Hansen, Douglas Dunn, Eric Rynes, Alexander Y. Rudensky, Mark Groudine, Rajinder Kaul, Audra K. Johnson, Arthur I. Skoultchi, Richard Sandstrom, Peter J. Sabo, Morgan Diegel, Marella F. T. R. de Bruijn, Daniel Bates, Steven Z. Josefowicz, Evan E. Eichler, Jeff Vierstra, Michaël Bender, Eric Haugen, Piper M. Treuting, Rachel Byron, Robert M. Samstein, Theresa K. Canfield, Miaohua Zhang, Matthew S. Wilken, Erika Giste, Kai Hsin Chang, Shinny Vong, Stuart H. Orkin, Fidencio Neri, Kristen Lee, Richard Humbert, Thomas A. Reh, John A. Stamatoyannopoulos
Publikováno v:
Vierstra, J; Rynes, E; Sandstrom, R; Zhang, M; Canfield, T; Scott Hansen, R; et al.(2014). Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution. Science, 346(6212), 1007-1012. doi: 10.1126/science.1246426. UCSF: Retrieved from: http://www.escholarship.org/uc/item/3hh233xj
Science (New York, N.Y.), vol 346, iss 6212
Science (New York, N.Y.), vol 346, iss 6212
© 2014 by the American Association for the Advancement of Science; all rights reserved. To study the evolutionary dynamics of regulatory DNA, we mapped >1.3 million deoxyribonuclease I-hypersensitive sites (DHSs) in 45 mouse cell and tissue types, a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45833cb70075af1e58eb4d7be4358038
https://ora.ox.ac.uk/objects/uuid:db4c1d75-7682-4e65-8ea3-e600e7d57604
https://ora.ox.ac.uk/objects/uuid:db4c1d75-7682-4e65-8ea3-e600e7d57604
Autor:
Hongzhu Qu, Peter J. Sabo, Steven F. Ziegler, Ian A. Glass, Rajinder Kaul, Shelly Heimfeld, Shamil R. Sunyaev, Eric Rynes, Jennifer A. Brody, Tanya Kutyavin, R. Scott Hansen, Chris Cotsapas, Daniel Bates, Robert E. Thurman, Matthew T. Maurano, Shane Neph, Anthony Shafer, Sandra Stehling-Sun, Nona Sotoodehnia, Eric Haugen, Fidencio Neri, Theresa K. Canfield, Erika Giste, Richard Sandstrom, Morgan Diegel, Antony Raubitschek, Hao Wang, Audra K. Johnson, Kristen Lee, Alex Reynolds, Richard Humbert, John A. Stamatoyannopoulos
Publikováno v:
Science. 337:1190-1195
Predictions of Genetic Disease Many genome-wide association studies (GWAS) have identified loci and variants associated with disease, but the ability to predict disease on the basis of these genetic variants remains small. Maurano et al. (p. 1190 ; s
Autor:
Vishwanath R. Iyer, Lingyun Song, Michael O. Dorschner, Joshua M. Akey, Andrew B. Stergachis, Kristen Lee, Anthony Shafer, Shinny Vong, Amartya Sanyal, Hongzhu Qu, Audra K. Johnson, Ericka M. Johnson, Kavita Garg, Minerva E. Sanchez, Daniel Bates, Benjamin Vernot, George Stamatoyannopoulos, Tanya Kutyavin, Robert E. Thurman, Patrick A. Navas, Douglas Dunn, Eric Rynes, Bryan R. Lajoie, Matthew T. Maurano, Jeff Vierstra, Molly Weaver, Jason D. Lieb, Sam John, Alexias Safi, Lisa Boatman, Shane Neph, Zhancheng Zhang, Yongqi Yan, Bum Kyu Lee, Dimitra Lotakis, Zhuzhu Zhang, Gregory E. Crawford, Tristan Frum, Abigail K. Ebersol, Richard Sandstrom, Theresa K. Canfield, Eric Haugen, Erika Giste, Job Dekker, Muneesh Tewari, Alex Reynolds, Eric D. Nguyen, Fidencio Neri, Richard Humbert, Peter J. Sabo, Morgan Diegel, John A. Stamatoyannopoulos, Vaughn Roach, Hao Wang, Rajinder Kaul, Terrence S. Furey, Nathan C. Sheffield, R. Scott Hansen, Jeremy M. Simon, Shamil R. Sunyaev, Boris Lenhard, Darin London
Publikováno v:
Nature
DNase I hypersensitive sites (DHSs) are markers of regulatory DNA and have underpinned the discovery of all classes of cis-regulatory elements including enhancers, promoters, insulators, silencers and locus control regions. Here we present the first
Autor:
Michael J. MacCoss, Mark Groudine, Molly Weaver, Tanya Kutyavin, John A. Stamatoyannopoulos, Shane Neph, Daniel Bates, Eric Rynes, Benjamin Vernot, Douglas Dunn, Anthony Schafer, Joshua M. Akey, Peter J. Sabo, Jeff Vierstra, Robert E. Thurman, R. Scott Hansen, Andrew B. Stergachis, Rajinder Kaul, Shinny Vong, Alex Reynolds, Theresa K. Canfield, Richard Humbert, Erika Giste, Jun Neri, Michaël Bender, Miaohua Zhang, Kristen Lee, Rachel Byron, Richard Sandstrom, Sam John, Eric Haugen, Gayathri Balasundaram, Vaughn Roach, Morgan Diegel, Hao Wang, Audra K. Johnson, Matthew T. Maurano
Publikováno v:
Nature
Regulatory factor binding to genomic DNA protects the underlying sequence from cleavage by DNase I, leaving nucleotide-resolution footprints. Using genomic DNase I footprinting across 41 diverse cell and tissue types, we detected 45 million transcrip
Autor:
Thomas A. Reh, Daniel Bates, Elhanan Borenstein, Eric Haugen, Audra K. Johnson, Richard Sandstrom, Peter J. Sabo, John A. Stamatoyannopoulos, Piper M. Treuting, Jeff Vierstra, Morgan Diegel, Miaohua Zhang, Shinny Vong, Shane Neph, Douglas Dunn, Sandra Stelhing-Sun, Alex Reynolds, Mark Groudine, R. Scott Hansen, Theresa K. Canfield, Rajinder Kaul, Erika Giste, Andrew B. Stergachis, M. A. Bender, Robert E. Thurman, Fidencio Neri, Rachel Byron, Matthew S. Wilken, Kristen Lee
Publikováno v:
Nature
The basic body plan and major physiological axes have been highly conserved during mammalian evolution, yet only a small fraction of the human genome sequence appears to be subject to evolutionary constraint. To quantify cis- versus trans-acting cont
Autor:
Ting Wang, Matthew D. Rasmussen, Dana N. Levasseur, Thomas A. Reh, Fidencio Neri, Tanya Kutyavin, Peter J. Good, Katrina Learned, Kate R. Rosenbloom, Lei Hoon See, Cedric Notredame, Ross C. Hardison, Chris Zaleski, Gerd A. Blobel, Dmitri D. Pervouchine, Shane Neph, Ali Mortazavi, Tamer Kahveci, Arthur I. Skoultchi, Peter J. Sabo, Jorg Drenkow, Alex Reynolds, Rebecca F. Lowdon, Marella F. T. R. de Bruijn, John A. Stamatoyannopoulos, Yin Shen, Richard Humbert, Anthony Kirilusha, Sherman M. Weissman, Roderic Guigó, James Taylor, Paul Flicek, Kristen Lee, Shinny Vong, Xiaoyi Cao, Douglas Dunn, Alessandra Breschi, Elise A. Feingold, Michael A. Beer, Piper M. Treuting, Igor Antoshechkin, Thomas R. Gingeras, Georgi K. Marinov, Tyrone Ryba, Jin Lian, Christine M. Disteche, Javier Herrero, Eric Rynes, Sheng Zhong, Weisheng Wu, Richard Sandstrom, Gilberto DeSalvo, Michael Snyder, Meagan Fastuca, Miguel Pignatelli, Mark Groudine, Sarah Djebali, Nergiz Dogan, Rajinder Kaul, Giovanni Bussotti, Henry Amrhein, Daniel Bates, Matthew S. Wilken, Alexander Dobin, Manolis Kellis, Licia Selleri, Diane Trout, Morgan Diegel, David M. Gilbert, Zhihai Ma, Jeff Vierstra, Xiao Qiao Zhou, Theresa K. Canfield, Venkat S. Malladi, Zhen Ye, Anthony Shafer, Tejaswini Mishra, Yiing Lin, Samantha Kuan, Anshul Kundaje, Thalia Papayannopoulou, Pablo Prieto, Robert E. Thurman, Long Pham, Cricket A. Sloan, Olgert Denas, Kathryn Beal, Erika Giste, Andrea Tanzer, Katherine I. Fisher-Aylor, Shin Lin, M. A. Bender, Stuart H. Orkin, Carrie A. Davis, Benjamin D. Pope, Rachel Byron, Srikanta Gosh, Beatriz Lacerda de Sousa, R. Scott Hansen, Brian A. Williams, Yong Cheng, Kanwei Li, Dongwon Lee, Yanli Wang, Evan E. Eichler, Camden Jansen, Feng Yue, Deepti Jain, Miaohua Zhang, David McCleary, W. James Kent, Melissa S. Cline, Kai Hsin Chang, Leslie B. Adams, Robert S. Harris, Ghia Euskirchen, Christapher S. Morrissey, Alexander Y. Rudensky, Philip Cayting, Drew T. Erickson, Eric Haugen, Michael J. Pazin, Vanessa M. Kirkup, Yi-Chieh Wu, Trupti Kawli, Mukul S. Bansal, Cheryl A. Keller, Lee Edsall, Robert M. Samstein, Bing Ren, Miguel Santos, Steven Z. Josefowicz, Barbara J. Wold, Julien Lagarde, Alan P. Boyle, Mitchell J. Weiss, Audra K. Johnson
Publikováno v:
PMC
Nature
Recercat. Dipósit de la Recerca de Catalunya
instname
Nature
Recercat. Dipósit de la Recerca de Catalunya
instname
The laboratory mouse shares the majority of its protein-coding genes with humans, making it the premier model organism in biomedical research, yet the two mammals differ in significant ways. To gain greater insights into both shared and species-speci
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6f145cfce45bc7081d45dad46f8b765
http://hdl.handle.net/1721.1/100777
http://hdl.handle.net/1721.1/100777
Autor:
Zhi Lu, Giltae Song, Troy W. Whitfield, Vishwanath R. Iyer, Teresa Vales, Angelika Merkel, Max Libbrecht, David Haussler, Ting Wang, Kristen Lee, Lingyun Song, Richard M. Myers, Alfonso Valencia, Rachel A. Harte, Xiaoqin Xu, Lucas D. Ward, Hazuki Takahashi, Nathan C. Sheffield, Thomas Derrien, Georgi K. Marinov, Eric D. Nguyen, Bernard B. Suh, Brian J. Raney, Richard Sandstrom, Thomas D. Tullius, Benoit Miotto, Alexander Dobin, Youhan Xu, Lukas Habegger, Ian Dunham, Brian A. Risk, Paul G. Giresi, Morgan C. Giddings, Hualin Xi, Anshul Kundaje, Robert S. Harris, Devin Absher, Peter J. Bickel, Yanbao Yu, Browen Aken, Colin Kingswood, Bryan R. Lajoie, Peter J. Good, Katrina Learned, Laura Elnitski, Shirley Pepke, Brandon King, Piero Carninci, Xinqiong Yang, Ghia Euskirchen, Kathryn Beal, Christelle Borel, Michael Muratet, Robert L. Grossman, David G. Knowles, Zarmik Moqtaderi, Veronika Boychenko, Steven P. Wilder, Michael L. Tress, Florencia Pauli, Alan P. Boyle, Andrea Tanzer, Philipp Kapranov, Serafim Batzoglou, Audra K. Johnson, Jun Neri, Nitin Bhardwaj, Elise A. Feingold, Venkat S. Malladi, Michael M. Hoffman, William Stafford Noble, Andrea Sboner, Mark Gerstein, Stephanie L. Parker, Jacqueline Dumais, Felix Schlesinger, Deborah R. Winter, Randall H. Brown, Thanh Truong, Rebecca F. Lowdon, Paolo Ribeca, Brooke Rhead, Peggy J. Farnham, Krista Thibeault, Terrence S. Furey, Donna Karolchik, Alec Victorsen, Xiaoan Ruan, Rehab F. Abdelhamid, Amy S. Nesmith, Jing Wang, Nicholas M. Luscombe, Alina R. Cao, Diane Trout, Teri Slifer, Peter E. Newburger, Cricket A. Sloan, Dimitra Lotakis, Stephen M. J. Searle, Ali Mortazavi, Alexandra Bignell, Alex Reynolds, Orion J. Buske, Chris Zaleski, Theresa K. Canfield, Ian Bell, Jin Lian, Vanessa K. Swing, Katalin Toth Fejes, Catherine Ucla, Robert E. Thurman, Jacqueline Chrast, Wei Lin, Tim Hubbard, Gary Saunders, Minyi Shi, Vihra Sotirova, Sherman M. Weissman, Jason D. Lieb, Richard Humbert, Kevin M. Bowling, Assaf Gordon, Tarjei S. Mikkelsen, Jing Leng, Thomas R. Gingeras, Fabian Grubert, Nader Jameel, Jost Vielmetter, Hannah Monahan, Preti Jain, Lindsay L. Waite, Tony Shafer, Joel Rozowsky, Michael Coyne, Brian Reed, M. Kay, Harsha P. Gunawardena, Ross C. Hardison, Gavin Sherlock, Alexandra Charos, Joseph D. Fleming, Ann S. Zweig, Jason Gertz, Rajinder Kaul, Xianjun Dong, Alexandre Reymond, Carrie A. Davis, Haiyan Huang, Chao Cheng, Marco Mariotti, Phil Lacroute, Jason A. Dilocker, Kenneth McCue, R. Robilotto, Stylianos E. Antonarakis, Sridar V. Chittur, Justin Jee, Barbara J. Wold, Sudipto K. Chakrabortty, Erica Dumais, Amartya Sanyal, Nathan Boley, Tianyuan Wang, Julien Lagarde, Anthony Kirilusha, Jonathan B. Preall, Kevin Roberts, Erika Giste, Hugo Y. K. Lam, Alvis Brazma, Gregory J. Hannon, Eric Rynes, Philippe Batut, Kevin Struhl, Margus Lukk, Manching Ku, Suganthi Balasubramanian, Sonali Jha, Jorg Drenkow, W. James Kent, Michael Snyder, Jie Wang, Anna Battenhouse, Charles B. Epstein, Rami Rauch, Christopher Shestak, John A. Stamatoyannopoulos, Gaurab Mukherjee, Cédric Howald, Tanya Kutyavin, Huaien Wang, Scott A. Tenenbaum, Wan Ting Poh, Kate R. Rosenbloom, Manolis Kellis, Pauline A. Fujita, Linfeng Wu, Anita Bansal, Molly Weaver, Linda L. Grasfeder, Peter J. Sabo, Qiang Li, Melissa S. Cline, Robert M. Kuhn, Darin London, Seth Frietze, Atif Shahab, Shane Neph, Damian Keefe, James B. Brown, Mark Diekhans, Webb Miller, Katherine Aylor Fisher, Jiang Du, Hadar H. Sheffer, Sarah Djebali, Frank Doyle, Nathan Lamarre-Vincent, Chia-Lin Wei, Laura A.L. Dillon, Jennifer Harrow, Robert C. Altshuler, Tyler Alioto, Raymond K. Auerbach, Adam Frankish, Rebekka O. Sprouse, Patrick J. Collins, E. Christopher Partridge, Zheng Liu, Yoichiro Shibata, Elliott H. Margulies, Abigail K. Ebersol, Kimberly A. Showers, Eric D. Green, Krishna M. Roskin, Job Dekker, Barbara N. Pusey, Ekta Khurana, Gilberto DeSalvo, Yijun Ruan, Hao Wang, Jainab Khatun, Henriette O'Geen, Alexej Abyzov, Brian Williams, Ryan M. McDaniell, Maya Kasowski, Manoj Hariharan, Felix Kokocinski, Gloria Despacio-Reyes, Zhancheng Zhang, Subhradip Karmakar, Ewan Birney, Koon-Kiu Yan, Xian Chen, Shinny Vong, Daniel Sobral, Nick Bild, Seul K.C. Kim, Timo Lassmann, Li Wang, Minerva E. Sanchez, Vaughan Roach, Theodore Gibson, Stephen C. J. Parker, Michael F. Lin, Patrick A. Navas, Laurence R. Meyer, Luiz O. F. Penalva, Bradley E. Bernstein, Kevin P. White, Emilie Aït Yahya Graison, Juan M. Vaquerizas, Sushma Iyengar, Kimberly M. Newberry, Akshay Bhinge, Xiaolan Zhang, Kim Bell, Yoshihide Hayashizaki, Lucas Lochovsky, Noam Shoresh, Hagen Tilgner, Philip Cayting, Dorrelyn Patacsil, Timothy E. Reddy, Eric Haugen, Katherine E. Varley, M. van Baren, Nathan D. Trinklein, Bum Kyu Lee, Tristan Frum, Marianne Lindahl-Allen, Timothy Durham, Roderic Guigó, Christopher W. Maier, Micha Sammeth, Debasish Raha, Timothy R. Dreszer, Benedict Paten, Robbyn Issner, Michael R. Brent, Kevin Y. Yip, Kim Blahnik, Jason Ernst, Zhiping Weng, Henry Amrhein, Arend Sidow, Javier Herrero, Hui Gao, Stephen G. Landt, Pouya Kheradpour, Galt P. Barber, Gregory E. Crawford, Toby Hunt
Publikováno v:
PLoS Biology
PLoS Biology, Public Library of Science, 2011, 9 (4), pp.e1001046. ⟨10.1371/journal.pbio.1001046⟩
PLoS biology, vol 9, iss 4
Recercat. Dipósit de la Recerca de Catalunya
instname
PLoS Biology, Vol 9, Iss 4, p e1001046 (2011)
PLoS biology
PLoS
PLOS Biology, Vol. 9, No 4 (2011) P. e1001046
PLoS Biology, Public Library of Science, 2011, 9 (4), pp.e1001046. ⟨10.1371/journal.pbio.1001046⟩
PLoS biology, vol 9, iss 4
Recercat. Dipósit de la Recerca de Catalunya
instname
PLoS Biology, Vol 9, Iss 4, p e1001046 (2011)
PLoS biology
PLoS
PLOS Biology, Vol. 9, No 4 (2011) P. e1001046
The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the scientific and medical communities to interpret the human genome sequence and apply it to understand human biology and improve health. The ENCODE Consortium is integrat
Autor:
Ann S. Hammonds, Mark D. Biggin, William W. Fisher, Xiao Yong Li, John A. Stamatoyannopoulos, Sean Thomas, Theresa K. Canfield, Erika Giste, Richard Sandstrom, Susan E. Celniker, Peter J. Sabo, Robert E. Thurman
Publikováno v:
Genome Biology
Background The development of complex organisms is believed to involve progressive restrictions in cellular fate. Understanding the scope and features of chromatin dynamics during embryogenesis, and identifying regulatory elements important for direc