Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics

Autor: Ellen Kuang, Matthew Marney, Daniel Cuevas, Robert A. Edwards, Erica M. Forsberg

Publikováno v: Metabolites, Vol 10, Iss 4, p 156 (2020)

Genomics-based metabolic models of microorganisms currently have no easy way of corroborating predicted biomass with the actual metabolites being produced. This study uses untargeted mass spectrometry-based metabolomics data to generate a list of acc

Externí odkaz: https://doaj.org/article/8206cb259ad348099a9d9e40fc9968fe

Treatment with Bacterial Biologics Promotes Healthy Aging and Traumatic Brain Injury Responses in Adult

Autor: Erica M. Forsberg, Jessica Mastroianni, Kim D. Finley, Brandon Molina, Ema Suarez, Brijinder Soni

Publikováno v: Cells, Vol 10, Iss 900, p 900 (2021)
Cells
Volume 10
Issue 4

Drosophila are widely used to study neural development, immunity, and inflammatory pathways and processes associated with the gut–brain axis. Here, we examine the response of adult Drosophila given an inactive bacteriologic (IAB
proprietary ly

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c00e3843f506682b885004ec8fe21bf
https://pubmed.ncbi.nlm.nih.gov/33919883

Fluorinated Gold Nanoparticles for Nanostructure Imaging Mass Spectrometry

Autor: Ellen Kuang, Amelia Palermo, Gary Siuzdak, Benedikt Warth, H. Paul Benton, Aries E. Aisporna, Elizabeth Billings, David Berry, Erica M. Forsberg

Publikováno v: ACS Nano

Nanostructure imaging mass spectrometry (NIMS) with fluorinated gold nanoparticles (f-AuNPs) is a nanoparticle assisted laser desorption/ionization approach that requires low laser energy and has demonstrated high sensitivity. Here we describe NIMS w

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34728aee6970df8e23e17929b11bbdb9
https://doi.org/10.1021/acsnano.8b02376

Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses

Autor: Gary Siuzdak, Duane Rinehart, Paul D. Robbins, J. Rafael Montenegro-Burke, Farris L. Poole, Erica M. Forsberg, Luke L. Lairson, Tao Huan, Michael P. Thorgersen, Gregory P. Krantz, Thiery Phommavongsay, Matthew W. Fields, H. Paul Benton, Aries E. Aisporna, Michael W. W. Adams, Laura J. Niedernhofer, Trent R. Northen

Publikováno v: Analytical chemistry, vol 88, iss 19
Montenegro-Burke, JR; Phommavongsay, T; Aisporna, AE; Huan, T; Rinehart, D; Forsberg, E; et al.(2016). Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses. Analytical Chemistry, 88(19), 9753-9758. doi: 10.1021/acs.analchem.6b02676. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7mh5p3pt
Analytical Chemistry

© 2016 American Chemical Society. Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet w

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::616589b06fb6d6e329121256cc88502c
https://doi.org/10.1021/acs.analchem.6b02676

Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online

Autor: Tao Huan, Brian Hilmers, Benedikt Warth, H. Paul Benton, Erica M. Forsberg, Gary Siuzdak, Duane Rinehart

Publikováno v: Nature protocols. 13(4)

Systems biology is the study of complex living organisms, and as such, analysis on a systems-wide scale involves the collection of information-dense data sets that are representative of an entire phenotype. To uncover dynamic biological mechanisms, b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1e7df4f9d0cf08fa56bca583f2d57fed
https://pubmed.ncbi.nlm.nih.gov/28448069