Zobrazeno 1 - 7
of 7
pro vyhledávání: '"Erica Dumais"'
Autor:
Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M Mudge, Cédric Howald, Sylvain Foissac, Catherine Ucla, Jacqueline Chrast, Paolo Ribeca, David Martin, Ryan R Murray, Xinping Yang, Lila Ghamsari, Chenwei Lin, Ian Bell, Erica Dumais, Jorg Drenkow, Michael L Tress, Josep Lluís Gelpí, Modesto Orozco, Alfonso Valencia, Nynke L van Berkum, Bryan R Lajoie, Marc Vidal, John Stamatoyannopoulos, Philippe Batut, Alex Dobin, Jennifer Harrow, Tim Hubbard, Job Dekker, Adam Frankish, Kourosh Salehi-Ashtiani, Alexandre Reymond, Stylianos E Antonarakis, Roderic Guigó, Thomas R Gingeras
Publikováno v:
PLoS ONE, Vol 7, Iss 1, p e28213 (2012)
The classic organization of a gene structure has followed the Jacob and Monod bacterial gene model proposed more than 50 years ago. Since then, empirical determinations of the complexity of the transcriptomes found in yeast to human has blurred the d
Externí odkaz:
https://doaj.org/article/812c3a8d26464239be0aee257e827b33
Autor:
Vincent Lacroix, Sylvain Foissac, Ryan R. Murray, Sarah Djebali, Cédric Howald, Josep Lluís Gelpí, Paolo Ribeca, Alexandre Reymond, Kourosh Salehi-Ashtiani, Marc Vidal, Roderic Guigó, Thomas R. Gingeras, John A. Stamatoyannopoulos, Erica Dumais, Alexander Dobin, Bryan R. Lajoie, Tim Hubbard, Stylianos E. Antonarakis, Catherine Ucla, Ian Bell, Jacqueline Chrast, Alfonso Valencia, Modesto Orozco, Philippe Batut, Christelle Borel, Adam Frankish, Philipp Kapranov, Jorg Drenkow, Michael L. Tress, Chenwei Lin, Jennifer Harrow, Xinping Yang, Lila Ghamsari, Job Dekker, David C. Martin, Jonathan M. Mudge, Julien Lagarde, Nynke L. van Berkum
Publikováno v:
PLoS ONE
PLoS ONE, Vol 7, Iss 1, p e28213 (2012)
PLoS ONE, Public Library of Science, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
PLoS ONE, Public Library of Science, 2012, 7, pp.1-22
PLoS ONE, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
PLoS One, vol. 7, no. 1, pp. e28213
Plos One 1 (7), Non paginé. (2012)
PloS one
PLoS ONE, 2012, 7, pp.1-22
PLOS ONE, Vol. 7, No 1 (2012) P. e28213
PLoS ONE, Vol 7, Iss 1, p e28213 (2012)
PLoS ONE, Public Library of Science, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
PLoS ONE, Public Library of Science, 2012, 7, pp.1-22
PLoS ONE, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
PLoS One, vol. 7, no. 1, pp. e28213
Plos One 1 (7), Non paginé. (2012)
PloS one
PLoS ONE, 2012, 7, pp.1-22
PLOS ONE, Vol. 7, No 1 (2012) P. e28213
The classic organization of a gene structure has followed the Jacob and Monod bacterial gene model proposed more than 50 years ago. Since then, empirical determinations of the complexity of the transcriptomes found in yeast to human has blurred the d
Autor:
Tyler Alioto, Colin Kingswood, Lorian Schaffer, Sylvain Foissac, Kimberly Bell, Diane Trout, Wei Lin, Nathalie Walters, Thomas R. Gingeras, Oscar Junhong Luo, Pedro G. Ferreira, Atif Shahab, Assaf Gordon, Kata Fejes-Toth, Joao Curado, Jacqueline Chrast, Thomas Derrien, Georgi K. Marinov, Hazuki Takahashi, Alexander Dobin, Nadav Bar, Lei-Hoon See, Morgan C. Giddings, Erica Dumais, Michael Sammeth, Philipp Kapranov, Jainab Khatun, Meagan Fastuca, Jørgen Skancke, Ian Bell, Emilie Falconnet, Roderic Guigó, Huaien Wang, Kimberly Persaud, Alexandre Reymond, Carrie A. Davis, Xiaoan Ruan, Rehab F. Abdelhamid, Daniel Robyr, Joel Rozowsky, Ana Maria Suzuki, Sonali Jha, Marion S. Röder, Sudipto K. Chakrabortty, Brian A. Risk, Hagen Tilgner, Eddie Park, Stylianos E. Antonarakis, Piero Carninci, Hui Gao, Sarah Djebali, Timo Lassmann, Andrea Tanzer, Philippe Batut, Cédric Howald, Yanbao Yu, Ali Mortazavi, Felix Kokocinski, Jennifer Harrow, Mark Gerstein, Melissa J. Fullwood, Chenghai Xue, Gregory J. Hannon, Xian Chen, Igor Antoshechkin, Yoshihide Hayashizaki, Brian A. Williams, Chris Zaleski, John A. Wrobel, Radha Duttagupta, Barbara J. Wold, Julien Lagarde, David Gonzalez, Yijun Ruan, Tim Hubbard, Angelika Merkel, Rory Johnson, Jonathan B. Preall, Jorg Drenkow, Brandon King, Paolo Ribeca, Harsha P. Gunawardena, Jacqueline Dumais, Felix Schlesinger, Michael T. Baer
Publikováno v:
Nature
Nature, Nature Publishing Group, 2012, 489 (7414), pp.101-108. ⟨10.1038/nature11233⟩
Nature, Vol. 489, No 7414 (2012) pp. 101-8
Nature, vol 489, iss 7414
Nature, vol. 489, no. 7414, pp. 101-108
Nature 7414 (489), 101-108. (2012)
Recercat. Dipósit de la Recerca de Catalunya
instname
Nature, Nature Publishing Group, 2012, 489 (7414), pp.101-108. ⟨10.1038/nature11233⟩
Nature, Vol. 489, No 7414 (2012) pp. 101-8
Nature, vol 489, iss 7414
Nature, vol. 489, no. 7414, pp. 101-108
Nature 7414 (489), 101-108. (2012)
Recercat. Dipósit de la Recerca de Catalunya
instname
Eukaryotic cells make many types of primary and processed RNAs that are found either in specific subcellular compartments or throughout the cells. A complete catalogue of these RNAs is not yet available and their characteristic subcellular localizati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ec675d7c36801cbe04b6d1fe4718f738
http://hdl.handle.net/10230/23073
http://hdl.handle.net/10230/23073
Autor:
Zhi Lu, Giltae Song, Troy W. Whitfield, Vishwanath R. Iyer, Teresa Vales, Angelika Merkel, Max Libbrecht, David Haussler, Ting Wang, Kristen Lee, Lingyun Song, Richard M. Myers, Alfonso Valencia, Rachel A. Harte, Xiaoqin Xu, Lucas D. Ward, Hazuki Takahashi, Nathan C. Sheffield, Thomas Derrien, Georgi K. Marinov, Eric D. Nguyen, Bernard B. Suh, Brian J. Raney, Richard Sandstrom, Thomas D. Tullius, Benoit Miotto, Alexander Dobin, Youhan Xu, Lukas Habegger, Ian Dunham, Brian A. Risk, Paul G. Giresi, Morgan C. Giddings, Hualin Xi, Anshul Kundaje, Robert S. Harris, Devin Absher, Peter J. Bickel, Yanbao Yu, Browen Aken, Colin Kingswood, Bryan R. Lajoie, Peter J. Good, Katrina Learned, Laura Elnitski, Shirley Pepke, Brandon King, Piero Carninci, Xinqiong Yang, Ghia Euskirchen, Kathryn Beal, Christelle Borel, Michael Muratet, Robert L. Grossman, David G. Knowles, Zarmik Moqtaderi, Veronika Boychenko, Steven P. Wilder, Michael L. Tress, Florencia Pauli, Alan P. Boyle, Andrea Tanzer, Philipp Kapranov, Serafim Batzoglou, Audra K. Johnson, Jun Neri, Nitin Bhardwaj, Elise A. Feingold, Venkat S. Malladi, Michael M. Hoffman, William Stafford Noble, Andrea Sboner, Mark Gerstein, Stephanie L. Parker, Jacqueline Dumais, Felix Schlesinger, Deborah R. Winter, Randall H. Brown, Thanh Truong, Rebecca F. Lowdon, Paolo Ribeca, Brooke Rhead, Peggy J. Farnham, Krista Thibeault, Terrence S. Furey, Donna Karolchik, Alec Victorsen, Xiaoan Ruan, Rehab F. Abdelhamid, Amy S. Nesmith, Jing Wang, Nicholas M. Luscombe, Alina R. Cao, Diane Trout, Teri Slifer, Peter E. Newburger, Cricket A. Sloan, Dimitra Lotakis, Stephen M. J. Searle, Ali Mortazavi, Alexandra Bignell, Alex Reynolds, Orion J. Buske, Chris Zaleski, Theresa K. Canfield, Ian Bell, Jin Lian, Vanessa K. Swing, Katalin Toth Fejes, Catherine Ucla, Robert E. Thurman, Jacqueline Chrast, Wei Lin, Tim Hubbard, Gary Saunders, Minyi Shi, Vihra Sotirova, Sherman M. Weissman, Jason D. Lieb, Richard Humbert, Kevin M. Bowling, Assaf Gordon, Tarjei S. Mikkelsen, Jing Leng, Thomas R. Gingeras, Fabian Grubert, Nader Jameel, Jost Vielmetter, Hannah Monahan, Preti Jain, Lindsay L. Waite, Tony Shafer, Joel Rozowsky, Michael Coyne, Brian Reed, M. Kay, Harsha P. Gunawardena, Ross C. Hardison, Gavin Sherlock, Alexandra Charos, Joseph D. Fleming, Ann S. Zweig, Jason Gertz, Rajinder Kaul, Xianjun Dong, Alexandre Reymond, Carrie A. Davis, Haiyan Huang, Chao Cheng, Marco Mariotti, Phil Lacroute, Jason A. Dilocker, Kenneth McCue, R. Robilotto, Stylianos E. Antonarakis, Sridar V. Chittur, Justin Jee, Barbara J. Wold, Sudipto K. Chakrabortty, Erica Dumais, Amartya Sanyal, Nathan Boley, Tianyuan Wang, Julien Lagarde, Anthony Kirilusha, Jonathan B. Preall, Kevin Roberts, Erika Giste, Hugo Y. K. Lam, Alvis Brazma, Gregory J. Hannon, Eric Rynes, Philippe Batut, Kevin Struhl, Margus Lukk, Manching Ku, Suganthi Balasubramanian, Sonali Jha, Jorg Drenkow, W. James Kent, Michael Snyder, Jie Wang, Anna Battenhouse, Charles B. Epstein, Rami Rauch, Christopher Shestak, John A. Stamatoyannopoulos, Gaurab Mukherjee, Cédric Howald, Tanya Kutyavin, Huaien Wang, Scott A. Tenenbaum, Wan Ting Poh, Kate R. Rosenbloom, Manolis Kellis, Pauline A. Fujita, Linfeng Wu, Anita Bansal, Molly Weaver, Linda L. Grasfeder, Peter J. Sabo, Qiang Li, Melissa S. Cline, Robert M. Kuhn, Darin London, Seth Frietze, Atif Shahab, Shane Neph, Damian Keefe, James B. Brown, Mark Diekhans, Webb Miller, Katherine Aylor Fisher, Jiang Du, Hadar H. Sheffer, Sarah Djebali, Frank Doyle, Nathan Lamarre-Vincent, Chia-Lin Wei, Laura A.L. Dillon, Jennifer Harrow, Robert C. Altshuler, Tyler Alioto, Raymond K. Auerbach, Adam Frankish, Rebekka O. Sprouse, Patrick J. Collins, E. Christopher Partridge, Zheng Liu, Yoichiro Shibata, Elliott H. Margulies, Abigail K. Ebersol, Kimberly A. Showers, Eric D. Green, Krishna M. Roskin, Job Dekker, Barbara N. Pusey, Ekta Khurana, Gilberto DeSalvo, Yijun Ruan, Hao Wang, Jainab Khatun, Henriette O'Geen, Alexej Abyzov, Brian Williams, Ryan M. McDaniell, Maya Kasowski, Manoj Hariharan, Felix Kokocinski, Gloria Despacio-Reyes, Zhancheng Zhang, Subhradip Karmakar, Ewan Birney, Koon-Kiu Yan, Xian Chen, Shinny Vong, Daniel Sobral, Nick Bild, Seul K.C. Kim, Timo Lassmann, Li Wang, Minerva E. Sanchez, Vaughan Roach, Theodore Gibson, Stephen C. J. Parker, Michael F. Lin, Patrick A. Navas, Laurence R. Meyer, Luiz O. F. Penalva, Bradley E. Bernstein, Kevin P. White, Emilie Aït Yahya Graison, Juan M. Vaquerizas, Sushma Iyengar, Kimberly M. Newberry, Akshay Bhinge, Xiaolan Zhang, Kim Bell, Yoshihide Hayashizaki, Lucas Lochovsky, Noam Shoresh, Hagen Tilgner, Philip Cayting, Dorrelyn Patacsil, Timothy E. Reddy, Eric Haugen, Katherine E. Varley, M. van Baren, Nathan D. Trinklein, Bum Kyu Lee, Tristan Frum, Marianne Lindahl-Allen, Timothy Durham, Roderic Guigó, Christopher W. Maier, Micha Sammeth, Debasish Raha, Timothy R. Dreszer, Benedict Paten, Robbyn Issner, Michael R. Brent, Kevin Y. Yip, Kim Blahnik, Jason Ernst, Zhiping Weng, Henry Amrhein, Arend Sidow, Javier Herrero, Hui Gao, Stephen G. Landt, Pouya Kheradpour, Galt P. Barber, Gregory E. Crawford, Toby Hunt
Publikováno v:
PLoS Biology
PLoS Biology, Public Library of Science, 2011, 9 (4), pp.e1001046. ⟨10.1371/journal.pbio.1001046⟩
PLoS biology, vol 9, iss 4
Recercat. Dipósit de la Recerca de Catalunya
instname
PLoS Biology, Vol 9, Iss 4, p e1001046 (2011)
PLoS biology
PLoS
PLOS Biology, Vol. 9, No 4 (2011) P. e1001046
PLoS Biology, Public Library of Science, 2011, 9 (4), pp.e1001046. ⟨10.1371/journal.pbio.1001046⟩
PLoS biology, vol 9, iss 4
Recercat. Dipósit de la Recerca de Catalunya
instname
PLoS Biology, Vol 9, Iss 4, p e1001046 (2011)
PLoS biology
PLoS
PLOS Biology, Vol. 9, No 4 (2011) P. e1001046
The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the scientific and medical communities to interpret the human genome sequence and apply it to understand human biology and improve health. The ENCODE Consortium is integrat
Autor:
Antonio Piccolboni, Radharani Duttagupta, Sujit Dike, Ian Bell, J R Manak, Aarron T. Willingham, Victor Sementchenko, Hari Tammana, E Cheung, David A. Nix, Jorg Drenkow, Jill Cheng, Philipp Kapranov, Madhavan Ganesh, Gregg Helt, Erica Dumais, Thomas R. Gingeras, Srinka Ghosh
Publikováno v:
Cold Spring Harbor symposia on quantitative biology. 71
Regions of the genome not coding for proteins or not involved in cis-acting regulatory activities are frequently viewed as lacking in functional value. However, a number of recent large-scale studies have revealed significant regulated transcription
Autor:
Antonio Piccolboni, Philipp Kapranov, Peter F. Stadler, Aarron T. Willingham, David A. Nix, Erica Dumais, Madhavan Ganesh, Jorg Drenkow, Jana Hertel, Thomas R. Gingeras, Victor Sementchenko, Ian Bell, Hari Tammana, Jill Cheng, Ivo L. Hofacker, Radharani Duttagupta, Jörg Hackermüller, Sujit Dike, Evelyn Cheung, Sandeep Patel, Gregg Helt, Srinka Ghosh
Significant fractions of eukaryotic genomes give rise to RNA, much of which is unannotated and has reduced protein-coding potential. The genomic origins and the associations of human nuclear and cytosolic polyadenylated RNAs longer than 200 nucleotid
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e87fa4c3208fa83e10e335b515e55781
https://publica.fraunhofer.de/handle/publica/213142
https://publica.fraunhofer.de/handle/publica/213142
Autor:
Sarah Djebali, Philipp Kapranov, Sylvain Foissac, Julien Lagarde, Alexandre Reymond, Catherine Ucla, Carine Wyss, Jorg Drenkow, Erica Dumais, Ryan R Murray, Chenwei Lin, David Szeto, France Denoeud, Miquel Calvo, Adam Frankish, Jennifer Harrow, Periklis Makrythanasis, Marc Vidal, Kourosh Salehi-Ashtiani, Stylianos E Antonarakis, Thomas R Gingeras, Roderic Guigó
Publikováno v:
Recercat. Dipósit de la Recerca de Catalunya
instname
Nature Methods
Nature Methods, Nature Publishing Group, 2008, 5 (7), pp.629-635. ⟨10.1038/nmeth.1216⟩
Nature Methods, Vol. 5, No 7 (2008) pp. 629-635
Nature methods
Nature methods, vol. 5, no. 7, pp. 629-635
instname
Nature Methods
Nature Methods, Nature Publishing Group, 2008, 5 (7), pp.629-635. ⟨10.1038/nmeth.1216⟩
Nature Methods, Vol. 5, No 7 (2008) pp. 629-635
Nature methods
Nature methods, vol. 5, no. 7, pp. 629-635
Rapid amplification of cDNA ends (RACE) is a widely used approach for transcript identification. Random clone selection from the RACE mixture, however, is an ineffective sampling strategy if the dynamic range of transcript abundances is large. To imp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc5fff0aad70d2a8e93ba03ebb8aea5a
http://hdl.handle.net/10230/36420
http://hdl.handle.net/10230/36420