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Akademický článek

The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline

Autor: Sultan Nilay Can, Adam Nunn, Dario Galanti, David Langenberger, Claude Becker, Katharina Volmer, Katrin Heer, Lars Opgenoorth, Noe Fernandez-Pozo, Stefan A. Rensing

Publikováno v: Epigenomes, Vol 5, Iss 2, p 12 (2021)

Bisulfite sequencing is a widely used technique for determining DNA methylation and its relationship with epigenetics, genetics, and environmental parameters. Various techniques were implemented for epigenome-wide association studies (EWAS) to reveal

Externí odkaz: https://doaj.org/article/053cee9ccaac485f9cc26d76cdd59f6c

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EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

Autor: Adam, Nunn, Sultan Nilay, Can, Christian, Otto, Mario, Fasold, Bárbara, Díez Rodríguez, Noé, Fernández-Pozo, Stefan A, Rensing, Peter F, Stadler, David, Langenberger

Publikováno v: NAR Genomics and Bioinformatics

The expanding scope and scale of next generation sequencing experiments in ecological plant epigenetics brings new challenges for computational analysis. Existing tools built for model data may not address the needs of users looking to apply these te

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::fcc026e3d5d43c6a5a4036b78dc27a43
https://pubmed.ncbi.nlm.nih.gov/34805989

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EpiDiverse: European Training Network

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dris___00893::f29cec69c82b63c0a4a9a0e72d2780ab
https://hdl.handle.net/20.500.11755/01feb7de-6398-4669-bc3b-558938d9ded2

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Natural patterns of plant epigenetic variation: Understanding the link between DNA methylation and environmental conditions

Autor: Diez-Rodriguez, Barbara

In the last couple of decades, extreme weather events have been increasing, exceeding plants’ tolerance thresholds, and driving mass mortalities in many tree species. Furthermore, many studies suggest that due to their longevity, trees are not able

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f898791bb874ede3b321546177a37015

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