Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Epain, Victor"'
Autor:
Epain, Victor1 (AUTHOR), Andonov, Rumen1 (AUTHOR) rumen.andonov@irisa.fr
Publikováno v:
Algorithms for Molecular Biology. 2/6/2024, Vol. 19 Issue 1, p1-34. 34p.
Autor:
Epain, Victor, Andonov, Rumen
Assembling DNA fragments based on their overlaps remains the main assembly paradigm with long DNA fragments sequencing technologies, independently of the aim to resolve only one or several haplotypes. Since an overlap can be seen as a succession rela
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::2b1400358cb706997448c3314139b1ac
https://hal.inria.fr/hal-03878293
https://hal.inria.fr/hal-03878293
Publikováno v:
JOBIM2022
JOBIM2022, Jul 2022, Rennes, France
JOBIM2022, Jul 2022, Rennes, France
International audience; Scaffolding step in the genome assembly aims to determine the order and the orientation of a huge number of previously assembled genomic fractions (contigs/scaffolds). Here we introduce a particular case of this problem and de
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::a2c8f93e88e2710671c32603e578a7cb
https://inria.hal.science/hal-03625229/file/JOBIM_2022_KhloraaScaf.pdf
https://inria.hal.science/hal-03625229/file/JOBIM_2022_KhloraaScaf.pdf
This paper describes a novel assembly approach for chloroplast genomes. It contains two modular steps. In the first step, based on the hypothesis that chloroplasts genomes are over-represented compared to the nuclear genome in the plant's cell, we as
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::dc11cc39a6c8ffb287a701a2c4292337
https://hal.inria.fr/hal-03684406
https://hal.inria.fr/hal-03684406
Autor:
Epain, Victor, Andonov, Rumen
Scaffolding step in the genome assembly aims to determine the order and the orientation of a huge number of previously assembled genomic fractions (contigs/scaffolds). Here we introduce a particular case of this problem and denote it by Nested Pairs
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::650abbf9fd71e41a67739fcd18c5527f
https://hal.inria.fr/hal-03613353/file/nested_scaf.main.pdf
https://hal.inria.fr/hal-03613353/file/nested_scaf.main.pdf
Autor:
Epain, Victor, Andonov, Rumen
Publikováno v:
23ème congrès annuel de la Société Française de Recherche Opérationnelle et d'Aide à la Décision
23ème congrès annuel de la Société Française de Recherche Opérationnelle et d'Aide à la Décision, INSA Lyon, Feb 2022, Lyon, France
23ème congrès annuel de la Société Française de Recherche Opérationnelle et d'Aide à la Décision, INSA Lyon, Feb 2022, Lyon, France
International audience
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::3f90b4c84a64bc8c821c3207b6d6a2fc
https://hal.science/hal-03558978
https://hal.science/hal-03558978
Autor:
Epain, Victor
Assembling Deoxyribonucleic Acid (DNA) fragments based on their overlaps remains the main assembly paradigm with long DNA fragments sequencing technologies, independently of the aim to resolve only one or several haplotypes. Since an overlap can be s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::a66893445fb9401b97463a29d8041fba
https://hal.inria.fr/hal-03815190v3/file/revsymg_main.pdf
https://hal.inria.fr/hal-03815190v3/file/revsymg_main.pdf
Publikováno v:
BiATA 2021-4th International conference Bioinformatics: from Algorithms to Applications
BiATA 2021-4th International conference Bioinformatics: from Algorithms to Applications, Jul 2021, St. Petersbourg, Russia. pp.1-2
BiATA 2021-4th International conference Bioinformatics: from Algorithms to Applications, Jul 2021, St. Petersbourg, Russia. pp.1-2
International audience; Background Chloroplast genome assembly remains challenging because sequencing step outputs short reads both from plant and plastid genomes. Some recent dedicated assemblers [1,2] use the information of a highly conserved circu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::9d80c3f270be5a0655baee760075e257
https://hal.inria.fr/hal-03534195/document
https://hal.inria.fr/hal-03534195/document
Autor:
Epain, Victor
Publikováno v:
Bio-informatique [q-bio.QM]. 2020
Hristo Djidjev : collaborateur d'équipe associée HipcoGen; National audience; DNA molecular in silico analysis requires sequencing it in fragments called reads, and then assembling them. Today’s, long reads sequencing technologies offer the possi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::3062669e75d3d78d866993abbbf94d98
https://inria.hal.science/hal-03119772
https://inria.hal.science/hal-03119772
In silico studying a genome requires two steps: sequencing it with cloning and cutting the genome in several reads, and then, assembling the reads. It is well known that the number of sequencing errors is proportional to the reads' size. However, the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::39d3d49623a932dc83e485d7e3f530df
https://hal.science/hal-03007132
https://hal.science/hal-03007132