Live-cell imaging and analysis reveal cell phenotypic transition dynamics inherently missing in snapshot data.

Autor: Wang W; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15232, USA., Douglas D; ATCC Cell Systems, Gaithersburg, MD 20877, USA., Zhang J; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15232, USA., Kumari S; ATCC Cell Systems, Gaithersburg, MD 20877, USA., Enuameh MS; ATCC Cell Systems, Gaithersburg, MD 20877, USA., Dai Y; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15232, USA., Wallace CT; Department of Cell Biology, University of Pittsburgh, Pittsburgh, PA 15232, USA., Watkins SC; Department of Cell Biology, University of Pittsburgh, Pittsburgh, PA 15232, USA., Shu W; ATCC Cell Systems, Gaithersburg, MD 20877, USA., Xing J; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA 15232, USA. xing1@pitt.edu.; UPMC-Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA, USA.; Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, PA 15232, USA.

Publikováno v: Science advances [Sci Adv] 2020 Sep 04; Vol. 6 (36). Date of Electronic Publication: 2020 Sep 04 (Print Publication: 2020).

An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins.

Autor: Gupta A; Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA 01605, USA, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA, Department of Genetics, Washington University School of Medicine, St Louis, MO 63108, USA, Department of Biochemistry and Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA 01609, USA, Molecular Pathology Unit, Center for Computational and Integrative Biology, and Center for Cancer Research, Massachusetts General Hospital, Charlestown, MA 02129, USA, Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA and Department of Pathology, Harvard Medical School, Boston, MA 02115, USA., Christensen RG, Bell HA, Goodwin M, Patel RY, Pandey M, Enuameh MS, Rayla AL, Zhu C, Thibodeau-Beganny S, Brodsky MH, Joung JK, Wolfe SA, Stormo GD

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2014 Apr; Vol. 42 (8), pp. 4800-12. Date of Electronic Publication: 2014 Feb 12.

Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants.

Autor: Enuameh MS; Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA., Asriyan Y, Richards A, Christensen RG, Hall VL, Kazemian M, Zhu C, Pham H, Cheng Q, Blatti C, Brasefield JA, Basciotta MD, Ou J, McNulty JC, Zhu LJ, Celniker SE, Sinha S, Stormo GD, Brodsky MH, Wolfe SA

Publikováno v: Genome research [Genome Res] 2013 Jun; Vol. 23 (6), pp. 928-40. Date of Electronic Publication: 2013 Mar 07.

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system.

Autor: Zhu LJ; Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA., Christensen RG, Kazemian M, Hull CJ, Enuameh MS, Basciotta MD, Brasefield JA, Zhu C, Asriyan Y, Lapointe DS, Sinha S, Wolfe SA, Brodsky MH

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2011 Jan; Vol. 39 (Database issue), pp. D111-7. Date of Electronic Publication: 2010 Nov 19.