Efficient Hashing of Multiple Spaced Seeds with Application

Autor: Eleonora Mian, Enrico Petrucci, Cinzia Pizzi, Matteo Comin

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::86d4c7395cd9002a0af1d4d2e965bf28
https://hdl.handle.net/11577/3471425

Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing

Autor: Cinzia Pizzi, Laurent Noé, Matteo Comin, Enrico Petrucci

Publikováno v: Lecture Notes in Computer Science
15th International Symposium on Bioinformatics Research and Applications (ISBRA)
15th International Symposium on Bioinformatics Research and Applications (ISBRA), Jun 2019, Barcelona, Spain. pp.208-219, ⟨10.1007/978-3-030-20242-2_18⟩
Journal of Computational Biology
Journal of Computational Biology, Mary Ann Liebert, 2020, 27 (2), pp.223-233. ⟨10.1089/cmb.2019.0298⟩
Journal of Computational Biology, 2020, 27 (2), pp.223-233. ⟨10.1089/cmb.2019.0298⟩
Bioinformatics Research and Applications ISBN: 9783030202415
ISBRA

International audience; Alignment-free classification of sequences has enabled high-throughput processing of sequencing data in many bioinformatics pipelines. Much work has been done to speed-up the indexing of k-mers through hash-table and other dat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1eccfc095a5980d1aa6abc4bc220de92
https://hal.archives-ouvertes.fr/hal-02146404/file/ISSH_Camera.pdf